TreatCFM001608 module
|
Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| methyltransferase activity | 0.021409426 | GO:0008168 |
| Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase | 0.002876041 | gene family |
| vitamin E biosynthesis (tocotrienols) | 0.006328747 | plantCyc |
| vitamin E biosynthesis (tocotrienols) | 0.006328747 | plantCyc |
| triacylglycerol degradation | 0.031194459 | plantCyc |
| Vitamin digestion and absorption | 0.049767215 | KEGG |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc01g105670.2 | phosphoenolpyruvate carboxylase-related kinase 2 | AT1G12680 (8.00E-130) |
| Solyc02g069080.2 | AT1G10180 (0) | |
| Solyc05g012460.2 | Cobalamin biosynthesis CobW-like protein | AT1G26520 (3.00E-153) |
| Solyc06g074330.2 | alpha/beta-Hydrolases superfamily protein | AT3G44510 (2.00E-110) |
| Solyc08g077240.2 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | AT4G18030 (0) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000620 | methyltransferase activity Transcription_related, Transcription factor: C2H2 vitamin E biosynthesis (tocotrienols) vitamin E biosynthesis (tocotrienols) | details |
| TreatCFM000621 | phosphoglycerate kinase activity glycolysis Transcription_related, Transcription factor: OFP adhesion to carbohydrates, Glycoside Hydrolases:CBM18;hydrolysis and/or rearrangement of glycosidic bonds, Carbohydrate-Binding Modules:GH19 vitamin E biosynthesis (tocotrienols) vitamin E biosynthesis (tocotrienols) glycolysis IV (plant cytosol) sucrose biosynthesis I (from photosynthesis) glycolysis I (from glucose 6-phosphate) Calvin-Benson-Bassham cycle gluconeogenesis I Carbon fixation in photosynthetic organisms | details |
| TreatCFM001439 | Ubiquitin_Proteasome_system, DUB: ULP vitamin E biosynthesis (tocotrienols) vitamin E biosynthesis (tocotrienols) Tuberculosis Wnt signaling pathway | details |
Expression profiles
 Show details about module gene expression profiling |