TreatCFM001628 module
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Protein:Yellow color--query protein Green color--interaction proteins.
Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontology |
|---|---|---|
| protein-phycocyanobilin_linkage | 0.000287902 | GO:0017009 |
| chlorophyll a degradation I | 0.002589629 | plantCyc |
| chlorophyll a degradation II | 0.002589629 | plantCyc |
Module member annotation
| Gene ID | Annotation | Ortholog in Arabidopsis (Blast e-value) |
|---|---|---|
| Solyc02g084550.2 | AT3G51100 (2.00E-45) | |
| Solyc03g007740.2 | VIRB2-interacting protein 2 | AT4G11220 (5.00E-81) |
| Solyc03g044470.2 | accelerated cell death 2 (ACD2) | AT4G37000 (5.00E-68) |
| Solyc06g068760.2 | crumpled leaf | AT5G51020 (4.00E-103) |
| Solyc06g072930.2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000147 | Ubiquitin_Proteasome_system, E3 adaptor: F-box Hippo signaling pathway -fly | details |
| TreatCFM000360 | tricarboxylic acid cycle carbon fixation phosphoenolpyruvate carboxylase activity adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM48 CO2 fixation into oxaloacetate (anapleurotic) glutamine biosynthesis III Methane metabolism | details |
| TreatCFM000788 | Fructose and mannose metabolism | details |
| TreatCFM000977 | carbon fixation tricarboxylic acid cycle phosphoenolpyruvate carboxylase activity N-acetyltransferase_activity Transcription_related, Transcription regulator: GNAT arginine biosynthesis II (acetyl cycle) ornithine biosynthesis farnesylcysteine salvage pathway CO2 fixation into oxaloacetate (anapleurotic) glutamine biosynthesis III Arginine biosynthesis Methane metabolism | details |
| TreatCFM001167 | protein-phycocyanobilin_linkage γ-glutamyl cycle L-ascorbate degradation V ascorbate glutathione cycle Glutathione metabolism | details |
| TreatCFM001564 | protein-phycocyanobilin_linkage UDP-D-xylose biosynthesis | details |
| TreatCFM001567 | lysine biosynthetic process via diaminopimelate phosphate-containing compound metabolic process diaminopimelate epimerase activity inorganic diphosphatase activity double-stranded DNA binding mitochondrion cytoplasm Transcription_related, Transcription factor: mTERF formation of glycosidic bonds, GlycosylTransferases: GTnc lysine biosynthesis VI Lysine biosynthesis Oxidative phosphorylation | details |
Expression profiles
 Show details about module gene expression profiling |