LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE012561

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE012561

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE012561AT1G48650.2DEA(D/H)-box RNA helicase family protein1positive
GWHGAAZE012608AT5G16680.1RING/FYVE/PHD zinc finger superfamily protein0.93positive
GWHGAAZE022125AT3G62900.1CW-type Zinc Finger0.91positive
GWHGAAZE025718AT4G29380.1protein kinase family protein / WD-40 repeat family protein0.91positive
GWHGAAZE022277AT1G48090.1calcium-dependent lipid-binding family protein0.9positive
GWHGAAZE011809AT4G14920.1Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein0.9positive
GWHGAAZE007912AT2G22010.1related to KPC10.9positive
GWHGAAZE004901AT4G12570.1ubiquitin protein ligase 50.9positive
GWHGAAZE024863AT4G01290.2Protein with evolutionarily conserved eIF4E-binding motif in its N-terminal domain that can form mRNA cap?binding complexes and has the potential for regulating gene expression as a translation factor associated plant-specific cell cycle regulator.0.9positive
GWHGAAZE003088AT3G52250.1Duplicated homeodomain-like superfamily protein0.9positive
GWHGAAZE013101AT5G02310.1proteolysis 60.89positive
GWHGAAZE022958AT1G70620.3cyclin-related0.89positive
GWHGAAZE006936AT5G44800.1chromatin remodeling 40.89positive
GWHGAAZE004668AT3G05680.1embryo defective 20160.89positive
GWHGAAZE016926AT4G39420.2spatacsin carboxy-terminus protein;(source:Araport11)0.89positive
GWHGAAZE019312AT1G33390.1RNA helicase family protein0.88positive
GWHGAAZE031544AT4G00800.1transducin family protein / WD-40 repeat family protein0.88positive
GWHGAAZE004219AT3G11960.1Cleavage and polyadenylation specificity factor (CPSF) A subunit protein0.88positive
GWHGAAZE022126AT3G62900.1CW-type Zinc Finger0.88positive
GWHGAAZE004282AT4G19900.1alpha 1,4-glycosyltransferase family protein0.88positive
GWHGAAZE001385AT2G28290.2P-loop containing nucleoside triphosphate hydrolases superfamily protein0.88positive
GWHGAAZE009881AT1G02890.2AAA-type ATPase family protein0.88positive
GWHGAAZE014254AT3G27700.2zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein0.88positive
GWHGAAZE014239AT1G70320.1ubiquitin-protein ligase 20.88positive
GWHGAAZE024115AT1G77300.2histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific)0.88positive
GWHGAAZE009866AT3G62900.1CW-type Zinc Finger0.88positive
GWHGAAZE017751AT5G61140.2U5 small nuclear ribonucleoprotein helicase0.87positive
GWHGAAZE009774AT4G02715.1flocculation FLO11-like protein;(source:Araport11)0.87positive
GWHGAAZE018326AT4G38600.1HEAT repeat ;HECT-domain (ubiquitin-transferase)0.87positive
GWHGAAZE001299AT5G12400.1DNA binding;zinc ion binding;DNA binding0.87positive
GWHGAAZE016335AT1G58230.1binding0.87positive
GWHGAAZE012321AT3G17205.3ubiquitin protein ligase 60.87positive
GWHGAAZE026212AT3G49600.1ubiquitin-specific protease 260.87positive
GWHGAAZE024875AT2G46020.2transcription regulatory protein SNF2, putative0.87positive
GWHGAAZE016581AT4G16310.1LSD1-like 30.87positive
GWHGAAZE010491AT2G43500.2Plant regulator RWP-RK family protein0.87positive
GWHGAAZE002038AT1G06410.1trehalose-phosphatase/synthase 70.87positive
GWHGAAZE027017AT5G35840.1phytochrome C0.87positive
GWHGAAZE025979AT2G25660.1embryo defective 24100.87positive
GWHGAAZE025801AT2G19390.1serine/arginine repetitive matrix protein;(source:Araport11)0.87positive
GWHGAAZE004666AT3G05680.1embryo defective 20160.87positive
GWHGAAZE003697AT5G24350.2Member of MAG2 complex on the ER that is responsible for efficient transport of seed storage proteins, functions in protein transport between the ER and Golgi apparatus, contain a Zeste?White 10 (ZW10) domain and a Sec39 domain. Required for proper maturation of seed storage proteins.0.87positive
GWHGAAZE024887----0.86positive
GWHGAAZE009191AT1G07705.2NOT2 / NOT3 / NOT5 family0.86positive
GWHGAAZE013681AT1G24460.1Encodes a novel protein that co-immunoprecipitates with SYP41. It is involved in vacuolar trafficking and salt tolerance, potentially via a role in vesicle fusion and in maintaining TGN structure or identity. Mutants display delayed formation of the Brefeldin A (BFA) compartment in cotyledons upon application of BFA.0.86positive
GWHGAAZE025981AT2G25660.1embryo defective 24100.86positive
GWHGAAZE032114AT3G46920.1Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain0.86positive
GWHGAAZE002100AT5G44180.1Homeodomain-like transcriptional regulator0.86positive
GWHGAAZE009134AT5G60410.3DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain0.86positive
GWHGAAZE003964AT3G04740.1RNA polymerase II transcription mediators0.86positive
GWHGAAZE016334AT4G31340.1myosin heavy chain-related0.86positive
GWHGAAZE013163AT5G02880.1ubiquitin-protein ligase 40.86positive
GWHGAAZE031117AT1G72390.1nuclear receptor coactivator;(source:Araport11)0.86positive
GWHGAAZE012421AT3G19870.1AP-5 complex subunit beta-like protein;(source:Araport11)0.86positive
GWHGAAZE025431AT3G27020.1YELLOW STRIPE like 60.86positive
GWHGAAZE030986AT4G32850.8nuclear poly(a) polymerase0.86positive
GWHGAAZE005118AT3G22430.1RNA recognition motif XS domain protein;(source:Araport11)0.86positive
GWHGAAZE027016AT5G35840.1phytochrome C0.86positive


Expression profiling, GSEA and motif analysis