LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE008243

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE008243

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE008243AT3G12120.2fatty acid desaturase 21positive
GWHGAAZE023964AT1G36940.1myotubularin-like protein;(source:Araport11)0.95positive
GWHGAAZE003577AT5G52510.1SCARECROW-like 80.95positive
GWHGAAZE004253AT3G54780.1Zinc finger (C3HC4-type RING finger) family protein0.95positive
GWHGAAZE023895AT1G71960.1ATP-binding casette family G250.95positive
GWHGAAZE031793AT2G26920.1Ubiquitin-associated/translation elongation factor EF1B protein0.94positive
GWHGAAZE014540AT2G23450.2Protein kinase superfamily protein0.94positive
GWHGAAZE031972AT3G05200.1RING/U-box superfamily protein0.94positive
GWHGAAZE023777AT5G12010.1nuclease;(source:Araport11)0.93positive
GWHGAAZE001672AT5G16440.1isopentenyl diphosphate isomerase 10.93positive
GWHGAAZE023943AT1G22710.1sucrose-proton symporter 20.93positive
GWHGAAZE022275AT1G48040.1Protein phosphatase 2C family protein0.93positive
GWHGAAZE024437AT2G25490.1EIN3-binding F box protein 10.93positive
GWHGAAZE015166AT4G39330.1cinnamyl alcohol dehydrogenase 90.93positive
GWHGAAZE026088AT5G25110.1CBL-interacting protein kinase 250.92positive
GWHGAAZE027620AT1G12710.1phloem protein 2-A120.92positive
GWHGAAZE005282AT3G08590.2Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent0.92positive
GWHGAAZE027295AT1G50640.1ethylene responsive element binding factor 30.92positive
GWHGAAZE023896AT1G71960.1ATP-binding casette family G250.92positive
GWHGAAZE014135AT3G16150.1N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein0.92positive
GWHGAAZE005036AT2G37040.1PHE ammonia lyase 10.92positive
GWHGAAZE009047AT2G28200.1C2H2-type zinc finger family protein0.92positive
GWHGAAZE023191AT2G23690.1HTH-type transcriptional regulator;(source:Araport11)0.91positive
GWHGAAZE009065AT2G28120.1Major facilitator superfamily protein0.91positive
GWHGAAZE020601AT4G39950.1cytochrome P450, family 79, subfamily B, polypeptide 20.91positive
GWHGAAZE001078AT2G27690.1cytochrome P450, family 94, subfamily C, polypeptide 10.91positive
GWHGAAZE015067AT3G25640.1Protein of unknown function, DUF6170.91positive
GWHGAAZE006238AT4G16563.1Eukaryotic aspartyl protease family protein0.91positive
GWHGAAZE023416AT4G37260.1myb domain protein 730.91positive
GWHGAAZE031241AT2G44810.1alpha/beta-Hydrolases superfamily protein0.91positive
GWHGAAZE009031AT5G22850.1Eukaryotic aspartyl protease family protein0.91positive
GWHGAAZE007586AT2G17760.1Eukaryotic aspartyl protease family protein0.9positive
GWHGAAZE009023AT5G22850.1Eukaryotic aspartyl protease family protein0.9positive
GWHGAAZE033363AT3G01980.3NAD(P)-binding Rossmann-fold superfamily protein0.9positive
GWHGAAZE025600AT3G24330.1O-Glycosyl hydrolases family 17 protein0.9positive
GWHGAAZE022613AT2G01260.1Protein of unknown function (DUF789)0.9positive
GWHGAAZE007089AT2G41900.1CCCH-type zinc finger protein with ARM repeat domain0.9positive
GWHGAAZE012739AT5G53110.1RING/U-box superfamily protein0.9positive
GWHGAAZE032774AT4G39330.1cinnamyl alcohol dehydrogenase 90.9positive
GWHGAAZE019600AT3G05290.1peroxisomal adenine nucleotide carrier 10.9positive
GWHGAAZE018616AT1G27730.1salt tolerance zinc finger0.9positive
GWHGAAZE020600AT5G05260.1cytochrome p450 79a20.89positive
GWHGAAZE027993AT5G45410.3Plastid localized protein of unknown function. Mutants are more susceptible to P. syringae and produce less callose upon infection.0.89positive
GWHGAAZE012174AT4G15620.1Uncharacterised protein family (UPF0497)0.89positive
GWHGAAZE005281AT2G38640.1Protein of unknown function (DUF567)0.89positive
GWHGAAZE020611AT4G39950.1cytochrome P450, family 79, subfamily B, polypeptide 20.89positive
GWHGAAZE026926AT1G05280.1Protein of unknown function (DUF604)0.89positive
GWHGAAZE009276----0.89positive
GWHGAAZE024117AT1G77280.1Protein kinase protein with adenine nucleotide alpha hydrolases-like domain0.89positive
GWHGAAZE023130AT3G28960.1Transmembrane amino acid transporter family protein0.89positive
GWHGAAZE020602AT5G35917.1cytochrome P450, family 79, subfamily A, polypeptide 3 pseudogene0.89positive
GWHGAAZE023132AT5G15240.1Transmembrane amino acid transporter family protein0.89positive
GWHGAAZE033794AT4G39950.1cytochrome P450, family 79, subfamily B, polypeptide 20.89positive
GWHGAAZE012652AT4G10430.3TMPIT-like protein0.89positive
GWHGAAZE003978AT5G06570.2alpha/beta-Hydrolases superfamily protein0.89positive
GWHGAAZE025297AT5G14760.1L-aspartate oxidase0.89positive
GWHGAAZE005288AT5G01990.1Auxin efflux carrier family protein0.88positive
GWHGAAZE007720AT1G65890.1acyl activating enzyme 120.88positive
GWHGAAZE008998AT1G08250.1arogenate dehydratase 60.88positive
GWHGAAZE028415AT5G26030.2ferrochelatase 10.88positive
GWHGAAZE007315AT4G37870.1phosphoenolpyruvate carboxykinase 10.88positive
GWHGAAZE032775AT4G37980.1elicitor-activated gene 3-10.88positive
GWHGAAZE009693AT5G24530.12-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein0.88positive
GWHGAAZE023133AT3G28960.1Transmembrane amino acid transporter family protein0.88positive
GWHGAAZE020599AT2G22330.1cytochrome P450, family 79, subfamily B, polypeptide 30.87positive
GWHGAAZE022349AT3G19970.1alpha/beta-Hydrolases superfamily protein0.87positive
GWHGAAZE004808AT4G05000.2Vacuolar protein sorting-associated protein VPS28 family protein0.87positive
GWHGAAZE000171AT4G13420.1high affinity K+ transporter 50.87positive
GWHGAAZE011697AT1G08970.4nuclear factor Y, subunit C90.87positive
GWHGAAZE020659AT5G04940.2SU(VAR)3-9 homolog 10.87positive
GWHGAAZE008933AT2G36090.1F-box family protein0.87positive
GWHGAAZE020613AT2G22330.1cytochrome P450, family 79, subfamily B, polypeptide 30.87positive
GWHGAAZE033830AT1G09250.1basic helix-loop-helix (bHLH) DNA-binding superfamily protein0.87positive
GWHGAAZE004154AT5G03990.1FK506-binding-like protein;(source:Araport11)0.87positive
GWHGAAZE015066AT1G76490.1hydroxy methylglutaryl CoA reductase 10.87positive
GWHGAAZE005528AT2G28930.1protein kinase 1B0.87positive
GWHGAAZE030090AT5G17540.1HXXXD-type acyl-transferase family protein0.87positive
GWHGAAZE000170AT4G13420.1high affinity K+ transporter 50.87positive
GWHGAAZE031952AT1G54710.1homolog of yeast autophagy 18 (ATG18) H0.87positive
GWHGAAZE024454AT3G15880.1WUS-interacting protein 20.86positive
GWHGAAZE029335AT1G09155.1phloem protein 2-B150.86positive
GWHGAAZE000173AT1G03840.1C2H2 and C2HC zinc fingers superfamily protein0.86positive
GWHGAAZE031580AT1G32170.1xyloglucan endotransglucosylase/hydrolase 300.86positive
GWHGAAZE031596AT1G32170.1xyloglucan endotransglucosylase/hydrolase 300.86positive
GWHGAAZE033143AT3G28960.1Transmembrane amino acid transporter family protein0.86positive
GWHGAAZE025545AT4G32390.1Nucleotide-sugar transporter family protein0.86positive
GWHGAAZE029245AT3G05545.1RING/U-box superfamily protein0.86positive
GWHGAAZE025165AT2G44430.1DNA-binding bromodomain-containing protein0.86positive
GWHGAAZE015555AT5G20050.1Protein kinase superfamily protein0.86positive
GWHGAAZE003089AT4G25030.2Plastid localized protein of unknown function. Mutants are more susceptible to P. syringae and produce less callose upon infection.0.86positive
GWHGAAZE022563AT2G01430.1homeobox-leucine zipper protein 170.86positive
GWHGAAZE003054AT1G79160.1filamentous hemagglutinin transporter;(source:Araport11)0.86positive
GWHGAAZE012920----0.86positive


Expression profiling, GSEA and motif analysis