LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE016038

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE016038

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE016038AT5G52560.1UDP-sugar pyrophosphorylase1positive
GWHGAAZE013932AT4G39090.1Papain family cysteine protease-0.64negative
GWHGAAZE023684AT5G21920.1YGGT family protein-0.63negative
GWHGAAZE007090AT3G57550.2guanylate kinase-0.63negative
GWHGAAZE005078AT3G10480.2NAC domain containing protein 50-0.63negative
GWHGAAZE008201AT4G12070.1hypothetical protein;(source:Araport11)-0.63negative
GWHGAAZE019159AT5G26820.1iron-regulated protein 3-0.63negative
GWHGAAZE004245AT1G08570.1atypical CYS HIS rich thioredoxin 4-0.62negative
GWHGAAZE006014AT1G63970.1isoprenoid F-0.62negative
GWHGAAZE005704AT5G03560.1Tetratricopeptide repeat (TPR)-like superfamily protein-0.62negative
GWHGAAZE007685AT1G42960.1expressed protein localized to the inner membrane of the chloroplast.-0.62negative
GWHGAAZE002186AT4G27470.1RING membrane-anchor 3-0.61negative
GWHGAAZE014119AT5G67190.1DREB and EAR motif protein 2-0.61negative
GWHGAAZE018844AT1G22930.1T-complex protein 11-0.61negative
GWHGAAZE025638AT4G13250.1NAD(P)-binding Rossmann-fold superfamily protein-0.61negative
GWHGAAZE027852AT4G17900.1PLATZ transcription factor family protein-0.6negative
GWHGAAZE011338AT1G04780.1Ankyrin repeat family protein-0.6negative
GWHGAAZE014359AT1G77930.2Chaperone DnaJ-domain superfamily protein-0.6negative
GWHGAAZE020868AT1G06800.1alpha/beta-Hydrolases superfamily protein-0.6negative
GWHGAAZE000771AT2G28800.163 kDa inner membrane family protein-0.6negative
GWHGAAZE015039AT4G35510.1PHD finger-like protein;(source:Araport11)-0.59negative
GWHGAAZE023022AT1G24360.1NAD(P)-binding Rossmann-fold superfamily protein-0.59negative
GWHGAAZE028420AT4G32940.1gamma vacuolar processing enzyme-0.59negative
GWHGAAZE004884AT4G22260.1Alternative oxidase family protein-0.59negative
GWHGAAZE028930AT5G25220.1KNOTTED1-like homeobox gene 3-0.59negative
GWHGAAZE031642AT5G06710.1homeobox from Arabidopsis thaliana-0.58negative
GWHGAAZE011302AT1G04780.1Ankyrin repeat family protein-0.58negative
GWHGAAZE003955AT1G33110.1MATE efflux family protein-0.58negative
GWHGAAZE015925AT1G01720.1NAC (No Apical Meristem) domain transcriptional regulator superfamily protein-0.58negative
GWHGAAZE029621AT5G49940.1NIFU-like protein 2-0.58negative
GWHGAAZE025613AT3G24420.1alpha/beta-Hydrolases superfamily protein-0.58negative
GWHGAAZE011810AT3G04910.1with no lysine (K) kinase 1-0.58negative
GWHGAAZE007938AT4G39380.2TSL-kinase interacting-like protein;(source:Araport11)-0.58negative
GWHGAAZE020895AT1G06800.1alpha/beta-Hydrolases superfamily protein-0.58negative
GWHGAAZE008829AT2G06025.1Acyl-CoA N-acyltransferases (NAT) superfamily protein-0.58negative
GWHGAAZE014966AT2G17760.1Eukaryotic aspartyl protease family protein-0.58negative
GWHGAAZE012141AT4G15560.1Deoxyxylulose-5-phosphate synthase-0.58negative
GWHGAAZE007722AT5G17230.2PHYTOENE SYNTHASE-0.58negative
GWHGAAZE006092AT4G11570.2Haloacid dehalogenase-like hydrolase (HAD) superfamily protein-0.58negative
GWHGAAZE031183AT1G16720.1high chlorophyll fluorescence phenotype 173-0.58negative
GWHGAAZE022490AT1G34300.1lectin protein kinase family protein-0.58negative
GWHGAAZE029487AT2G02370.2SNARE associated Golgi protein family-0.58negative
GWHGAAZE032739AT5G10490.1MSCS-like 2-0.58negative
GWHGAAZE009976AT4G01940.1NFU domain protein 1-0.58negative
GWHGAAZE018735AT5G64260.1EXORDIUM like 2-0.58negative
GWHGAAZE029941AT3G49190.1O-acyltransferase (WSD1-like) family protein-0.58negative
GWHGAAZE021688AT3G05290.1peroxisomal adenine nucleotide carrier 1-0.58negative
GWHGAAZE029931AT3G49200.1O-acyltransferase (WSD1-like) family protein-0.57negative
GWHGAAZE022219AT3G16910.1acyl-activating enzyme 7-0.57negative
GWHGAAZE013963AT2G21520.1Sec14p-like phosphatidylinositol transfer family protein-0.57negative
GWHGAAZE028622AT2G25605.1DNA-directed RNA polymerase subunit beta;(source:Araport11)-0.57negative
GWHGAAZE016486AT5G44250.1Protein of unknown function DUF829, transmembrane 53-0.57negative
GWHGAAZE016355AT1G09970.1Leucine-rich receptor-like protein kinase family protein-0.57negative
GWHGAAZE025498AT3G54900.1CAX interacting protein 1-0.57negative
GWHGAAZE032574AT2G15490.3UDP-glycosyltransferase 73B4-0.57negative
GWHGAAZE029940AT5G53380.1O-acyltransferase (WSD1-like) family protein-0.57negative
GWHGAAZE005048AT3G54850.1plant U-box 14-0.57negative
GWHGAAZE005528AT2G28930.1protein kinase 1B-0.57negative
GWHGAAZE022773AT1G13960.1WRKY DNA-binding protein 4-0.56negative
GWHGAAZE007881AT5G65140.1Haloacid dehalogenase-like hydrolase (HAD) superfamily protein-0.56negative
GWHGAAZE013723AT1G27340.1Galactose oxidase/kelch repeat superfamily protein-0.56negative
GWHGAAZE009563AT3G25160.1ER lumen protein retaining receptor family protein-0.56negative
GWHGAAZE022188AT3G05640.2Protein phosphatase 2C family protein-0.56negative
GWHGAAZE019108AT5G26770.2NEAP2 is a member of a small family containing coiled-coil domains, a nuclear localization signal and a C-terminal predicted transmembrane domain. It localizes to the nuclear periphery. Mutants have altered nuclear morphology and chromatin structure.-0.56negative
GWHGAAZE031372AT4G00630.1K+ efflux antiporter 2-0.56negative
GWHGAAZE014216AT1G09970.1Leucine-rich receptor-like protein kinase family protein-0.56negative
GWHGAAZE029932AT3G49190.1O-acyltransferase (WSD1-like) family protein-0.56negative
GWHGAAZE009000AT2G27830.1hypothetical protein;(source:Araport11)-0.56negative
GWHGAAZE005521AT5G02230.2Haloacid dehalogenase-like hydrolase (HAD) superfamily protein-0.56negative
GWHGAAZE002724AT4G27410.2NAC (No Apical Meristem) domain transcriptional regulator superfamily protein-0.56negative
GWHGAAZE016649AT1G78610.1mechanosensitive channel of small conductance-like 6-0.56negative
GWHGAAZE026760AT2G30860.1glutathione S-transferase PHI 9-0.56negative
GWHGAAZE015215AT2G22430.1homeobox protein 6-0.56negative
GWHGAAZE003282AT2G40000.1ortholog of sugar beet HS1 PRO-1 2-0.56negative
GWHGAAZE009561AT4G31940.1cytochrome P450, family 82, subfamily C, polypeptide 4-0.56negative
GWHGAAZE003017AT5G56250.2hapless 8-0.56negative
GWHGAAZE033355AT3G27110.2Peptidase family M48 family protein-0.56negative


Expression profiling, GSEA and motif analysis