LjaFGD


Co-expressed networks of Lonicera Japonica

The following network shows co-expression information of GWHGAAZE027868

Gene:
Yellow--query gene     Green--co-expressed genes     Grey--Genes without expression profile
Interaction line:
Pink--Genes positive co-expression relationship with target genes
Blue--Genes negative co-expression relationship with target genes
Grey--Genes without expression profile

show network details

Tissue preferential expression analysis

1.Nine Different Tissue:
youngest leaf  second leaf  mature leaf  Shoot apex  Stem  White floral bud  White flower  Green floral bud  Yellow flower  

   
Network Viewer With Differential Expressed Genes

1.Five stages of flowering:
Third green stage/Juvenile bud stage  
Complete white stage/Juvenile bud stage  
Silver flowering stage/Juvenile bud stage  
Gold flowering stage/Juvenile bud stage  
Complete white stage/Third green stage  
Silver flowering stage/Third green stage  
Gold flowering stage/Third green stage  
Silver flowering stage/Complete white stage  
Gold flowering stage/Complete white stage  
Gold flowering stage/Silver flowering stage  

2.Eight Different Stages of Development:
Leaf/stem
Juvenile_bud/stem
Third_green/stem
Second_white/stem
Silver_flowering/stem
Gold_flowering/stem
Tawny_withering/stem
Juvenile_bud/Leaf
Third_green/Leaf
Second_white/Leaf
Silver_flowering/Leaf
Gold_flowering/Leaf
Tawny_withering/Leaf
Third_green/Juvenile_bud
Second_white/Juvenile_bud
Silver_flowering/Juvenile_bud
Gold_flowering/Juvenile_bud
Tawny_withering/Juvenile_bud
Second_white/Third_green
Silver_flowering/Third_green
Gold_flowering/Third_green
Tawny_withering/Third_green
Silver_flowering/Second_white
Gold_flowering/Second_white
Tawny_withering/Second_white
Gold_flowering/Silver_flowering
Tawny_withering/Silver_flowering
Tawny_withering/Gold_flowering

3.Fresh buds or flowers at four different growth stages:
Whole_white_alabastrum_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Slightly_white_alabastrum(diploid)
Golden_flower_vs_Slightly_white_alabastrum(diploid)
Silvery_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Whole_white_alabastrum(diploid)
Golden_flower_vs_Silvery_flower(diploid)
Whole_white_alabastrum_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Slightly_white_alabastrum(tetraploid)
Golden_flower_vs_Slightly_white_alabastrum(tetraploid)
Silvery_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Whole_white_alabastrum(tetraploid)
Golden_flower_vs_Silvery_flower(tetraploid)



   

Co-expressed genes of GWHGAAZE027868

Co-expression relationship

IDOrtholog in ArabidopsisAnnotationPCCRelationship
GWHGAAZE027868AT4G17770.1trehalose phosphatase/synthase 51positive
GWHGAAZE019890AT4G30020.1PA-domain containing subtilase family protein0.94positive
GWHGAAZE002719AT4G27430.2COP1-interacting protein 70.92positive
GWHGAAZE005402AT3G51850.1calcium-dependent protein kinase 130.91positive
GWHGAAZE003135AT3G55020.1Ypt/Rab-GAP domain of gyp1p superfamily protein0.91positive
GWHGAAZE007908AT5G10020.1Leucine-rich receptor-like protein kinase family protein0.9positive
GWHGAAZE017678AT3G48610.1non-specific phospholipase C60.9positive
GWHGAAZE001161AT3G44200.1NIMA (never in mitosis, gene A)-related 60.9positive
GWHGAAZE025153AT1G55360.1Protein of Unknown Function (DUF239)0.9positive
GWHGAAZE013943AT4G36360.2beta-galactosidase 30.9positive
GWHGAAZE003366AT2G40620.1Basic-leucine zipper (bZIP) transcription factor family protein0.9positive
GWHGAAZE028787AT4G32410.1cellulose synthase 10.9positive
GWHGAAZE014448AT5G60920.1COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family0.9positive
GWHGAAZE025449AT3G26935.1DHHC-type zinc finger family protein0.9positive
GWHGAAZE026165AT4G31590.1Cellulose-synthase-like C50.89positive
GWHGAAZE005891AT5G41940.1Ypt/Rab-GAP domain of gyp1p superfamily protein0.89positive
GWHGAAZE007814AT4G24530.1O-fucosyltransferase family protein0.89positive
GWHGAAZE006378AT4G18030.1S-adenosyl-L-methionine-dependent methyltransferases superfamily protein0.89positive
GWHGAAZE000627AT5G58520.1Protein kinase superfamily protein0.89positive
GWHGAAZE004887AT4G22290.1Ubiquitin-specific protease family C19-related protein0.89positive
GWHGAAZE005214AT3G04470.1Ankyrin repeat family protein0.89positive
GWHGAAZE002657AT5G60860.1RAB GTPase homolog A1F0.89positive
GWHGAAZE000888AT2G28470.1beta-galactosidase 80.89positive
GWHGAAZE017893AT5G62890.3Xanthine/uracil permease family protein0.88positive
GWHGAAZE032521AT2G41820.1Leucine-rich repeat protein kinase family protein0.88positive
GWHGAAZE016437AT5G47820.2P-loop containing nucleoside triphosphate hydrolases superfamily protein0.88positive
GWHGAAZE010367AT1G08760.1Plant protein of unknown function (DUF936)0.88positive
GWHGAAZE002728AT5G54400.1S-adenosyl-L-methionine-dependent methyltransferases superfamily protein0.88positive
GWHGAAZE026988AT2G04780.2FASCICLIN-like arabinoogalactan 70.88positive
GWHGAAZE003148AT3G55020.1Ypt/Rab-GAP domain of gyp1p superfamily protein0.88positive
GWHGAAZE002636AT1G53300.1tetratricopetide-repeat thioredoxin-like 10.88positive
GWHGAAZE014898AT4G36360.1beta-galactosidase 30.88positive
GWHGAAZE026495AT2G40620.1Basic-leucine zipper (bZIP) transcription factor family protein0.88positive
GWHGAAZE003520AT4G23060.1IQ-domain 220.88positive
GWHGAAZE001778AT3G59110.1Protein kinase superfamily protein0.88positive
GWHGAAZE006644AT1G28440.1HAESA-like 10.88positive
GWHGAAZE009119AT5G60580.3RING/U-box superfamily protein0.88positive
GWHGAAZE007201AT5G12250.1beta-6 tubulin0.87positive
GWHGAAZE026300AT5G23850.1Arabidopsis thaliana protein of unknown function (DUF821)0.87positive
GWHGAAZE022513AT1G24764.1microtubule-associated proteins 70-20.87positive
GWHGAAZE001179AT5G22050.2Protein kinase superfamily protein0.87positive
GWHGAAZE017210AT3G21190.1O-fucosyltransferase family protein0.87positive
GWHGAAZE022262AT3G17120.2transmembrane protein;(source:Araport11)0.87positive
GWHGAAZE000463AT3G07210.1hypothetical protein;(source:Araport11)0.87positive
GWHGAAZE022547AT2G01570.1GRAS family transcription factor family protein0.87positive
GWHGAAZE012340AT3G62220.1Protein kinase superfamily protein0.87positive
GWHGAAZE016266AT1G78240.2S-adenosyl-L-methionine-dependent methyltransferases superfamily protein0.87positive
GWHGAAZE029214AT1G11680.1CYTOCHROME P450 51G10.87positive
GWHGAAZE011326AT2G30980.1SHAGGY-related protein kinase dZeta0.87positive
GWHGAAZE031477AT4G01220.1Nucleotide-diphospho-sugar transferase family protein0.87positive
GWHGAAZE016971AT2G22125.1binding0.87positive
GWHGAAZE013208AT2G36910.1ATP binding cassette subfamily B10.87positive
GWHGAAZE022471AT2G31660.1ARM repeat superfamily protein0.87positive
GWHGAAZE014536AT5G66560.1Phototropic-responsive NPH3 family protein0.86positive
GWHGAAZE017397AT1G52190.1Major facilitator superfamily protein0.86positive
GWHGAAZE006136----0.86positive
GWHGAAZE014672AT2G22900.1Galactosyl transferase GMA12/MNN10 family protein0.86positive
GWHGAAZE029482AT5G24710.1Transducin/WD40 repeat-like superfamily protein0.86positive
GWHGAAZE007211AT5G12250.1beta-6 tubulin0.86positive
GWHGAAZE011952AT1G04410.1Lactate/malate dehydrogenase family protein0.86positive
GWHGAAZE027261AT1G50660.1actin cytoskeleton-regulatory complex pan-like protein;(source:Araport11)0.86positive
GWHGAAZE028845AT4G32330.3TPX2 (targeting protein for Xklp2) protein family0.86positive
GWHGAAZE002720AT4G27430.2COP1-interacting protein 70.86positive
GWHGAAZE003923AT1G03520.1Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein0.86positive
GWHGAAZE002291AT3G22104.1Phototropic-responsive NPH3 family protein0.86positive
GWHGAAZE007696AT4G35470.1plant intracellular ras group-related LRR 40.86positive
GWHGAAZE030944AT1G52320.2kinesin-like protein;(source:Araport11)0.86positive
GWHGAAZE002299AT3G22104.1Phototropic-responsive NPH3 family protein0.86positive
GWHGAAZE010368AT4G37650.1GRAS family transcription factor0.86positive
GWHGAAZE000385----0.86positive
GWHGAAZE030555AT5G62890.3Xanthine/uracil permease family protein0.86positive
GWHGAAZE002039AT2G38020.1vacuoleless1 (VCL1)0.86positive
GWHGAAZE004519AT1G29790.2S-adenosyl-L-methionine-dependent methyltransferases superfamily protein0.86positive
GWHGAAZE014293AT4G09020.1isoamylase 30.86positive
GWHGAAZE014124AT5G47820.2P-loop containing nucleoside triphosphate hydrolases superfamily protein0.86positive
GWHGAAZE000903AT5G60640.1PDI-like 1-40.86positive


Expression profiling, GSEA and motif analysis