PH01000004G1210's details annotation
1.Annotation
ICBR annotation: helix-loop-helix DNA-binding protein, putative, expressed
Blast result AT2G27230 : 1.50E-77
Blast annotation: transcription factor-related
2.Location
Scaffold: PH01000004
Strand: -
| Region | Start | End |
| gene | 788597 | 794212 |
| mRNA | 788597 | 794212 |
| exon | 788597 | 788945 |
| exon | 789118 | 789243 |
| exon | 789336 | 789476 |
| exon | 790294 | 790395 |
| exon | 790509 | 792173 |
| exon | 793206 | 793265 |
| exon | 793350 | 793391 |
| exon | 793731 | 793812 |
| exon | 793915 | 794212 |
| CDS | 788778 | 788945 |
| CDS | 789118 | 789243 |
| CDS | 789336 | 789476 |
| CDS | 790294 | 790395 |
| CDS | 790509 | 792173 |
| CDS | 793206 | 793265 |
| CDS | 793350 | 793391 |
| CDS | 793731 | 793812 |
| CDS | 793915 | 794066 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001160 | TLK (from iTAK) cell_cortex |
| coexpression network | CFinderM001357 | bHLH Transcription_Regulator(from PlantTFDB) SET Transcription_Regulator(from iTAK) Lysine_degradation nucleus, histone_methylation histone_lysine_methylation protein dimerization activity, |
| coexpression network | CFinderM001577 | double-strand break repair, tyrosine biosynthetic process, prephenate dehydrogenase (NADP+) activity, protein_binding_involved_in_protein_folding prephenate_dehydrogenase_activity Non-homologous_end-joining cullin-RING ubiquitin ligase complex, DNA metabolic process, bHLH Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from PlantTFDB) | bHLH |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14215.5 | bHLH-MYC_N | 26 | 127 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0046983 | protein dimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.