CFinderM001357's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
bHLH Transcription_Regulator(from PlantTFDB)0.001245556GFam
SET Transcription_Regulator(from iTAK)0.014011826GFam
Lysine_degradation0.017960379KEGG
nucleus,0.023861694GO:0005634
histone_methylation0.034014765GO:0016571
histone_lysine_methylation0.037381172GO:0034968
protein dimerization activity,0.044871018GO:0046983

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000004G1210transcription factor-relatedAT2G27230 (1.50E-77)
PH01000202G0830SU(VAR)3-9 homolog 3AT1G73100 (2.00E-148)
PH01000441G0430DEAD box RNA helicase 1AT3G01540 (0.00E+00)
PH01000808G0320Ras-related small GTP-binding family proteinAT5G64813 (6.00E-101)
PH01001092G0280transcription factor-relatedAT2G27230 (8.80E-81)
PH01002970G0200SPOC domain / Transcription elongation factor S-II proteinAT5G11430 (1.30E-83)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000236NAK (from iTAK)
STAT Transcription_Regulator(from PlantTFDB)
Glycine,_serine_and_threonine_metabolism
magnesium_ion_transport
TKL-Pl-5 (from iTAK)
magnesium_ion_transmembrane_transporter_activity
details
CFinderM000544details
CFinderM001014SET Transcription_Regulator(from iTAK)
endoplasmic reticulum,
nucleus,
ubiquitin ligase complex,
histone_methylation
details
CFinderM001101SET Transcription_Regulator(from iTAK)
histone_methylation
histone_lysine_methylation
Lysine_degradation
nucleus,
ubiquitin ligase complex,
histone-lysine N-methyltransferase activity,
histone_binding
RNA_degradation
transcription, DNA-dependent,
protein ubiquitination,
details
CFinderM001160TLK (from iTAK)
cell_cortex

details
CFinderM001577double-strand break repair,
tyrosine biosynthetic process,
prephenate dehydrogenase (NADP+) activity,
protein_binding_involved_in_protein_folding
prephenate_dehydrogenase_activity
Non-homologous_end-joining
cullin-RING ubiquitin ligase complex,
DNA metabolic process,
bHLH Transcription_Regulator(from PlantTFDB)
details
CFinderM001722GTP_catabolic_process
small GTPase mediated signal transduction,
protein transport,
signal transduction,
GTPase activity,
GTP binding,
large ribosomal subunit,
intracellular,
membrane,
nucleocytoplasmic transport,
details

4.Expression profilings