CFinderM000544's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000044G0420DDB1-CUL4 associated factor 1AT4G31160 (0.00E+00)
PH01000458G0450-AT3G10650 (2.70E-37)
PH01000483G0040-- (-)
PH01000621G0430-- (-)
PH01000815G0280MEI2-like protein 5AT1G29400 (2.00E-159)
PH01001092G0280transcription factor-relatedAT2G27230 (8.80E-81)
PH01002124G0110transcription factor-relatedAT2G27230 (3.00E-81)
PH01002250G0240Protein phosphatase 2C family proteinAT2G46920 (4.00E-116)
PH01002647G0160-AT5G07960 (6.80E-30)
PH01003388G0050-- (-)
PH01003492G0050A20/AN1-like zinc finger family proteinAT1G12440 (2.30E-36)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000545binding,
SNF2 Transcription_Regulator(from iTAK)
helicase activity,
ubiquitin-protein ligase activity,
cellular protein modification process,
TOR_signaling
nucleic acid binding,
TORC1_complex
DNA binding,
hydrolase_activity,_acting_on_acid_anhydrides
RNA metabolic process,
RNA_transport
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay,
Ubiquitin_mediated_proteolysis
nucleotide binding,
RNA binding,
ATP binding,
protein binding,
details
CFinderM001160TLK (from iTAK)
cell_cortex

details
CFinderM001202mediator complex,
L-arabinose metabolic process,
regulation of transcription from RNA polymerase II promoter,
alpha-N-arabinofuranosidase activity,
RNA_polymerase_II_transcription_cofactor_activity
details
CFinderM001231cullin-RING ubiquitin ligase complex,
RNA modification,
ubiquitin-dependent protein catabolic process,
details
CFinderM001310mRNA_surveillance_pathway
binding,
details
CFinderM001357bHLH Transcription_Regulator(from PlantTFDB)
SET Transcription_Regulator(from iTAK)
Lysine_degradation
nucleus,
histone_methylation
histone_lysine_methylation
protein dimerization activity,
details
CFinderM001579mediator complex,
vesicle docking involved in exocytosis,
regulation of transcription from RNA polymerase II promoter,
RNA_polymerase_II_transcription_cofactor_activity
vesicle-mediated transport,
nucleotidyltransferase activity,
details
CFinderM001702ribosome biogenesis,
nucleolus,
eukaryotic translation initiation factor 3 complex,
RNA_transport
details
CFinderM001810mitosis,
spliceosomal complex,
Spliceosome
details

4.Expression profilings


Show details about module gene expression profiling