PH01002250G0240's details annotation
1.Annotation
ICBR annotation: protein phosphatase 2C, putative, expressed
Blast result AT2G46920 : 4.00E-116
Blast annotation: Protein phosphatase 2C family protein
2.Location
Scaffold: PH01002250
Strand: +
| Region | Start | End |
| gene | 210358 | 214479 |
| mRNA | 210358 | 214479 |
| exon | 210358 | 213588 |
| exon | 213924 | 214479 |
| CDS | 211225 | 213588 |
| CDS | 213924 | 213989 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000544 | |
| coexpression network | CFinderM001202 | mediator complex, L-arabinose metabolic process, regulation of transcription from RNA polymerase II promoter, alpha-N-arabinofuranosidase activity, RNA_polymerase_II_transcription_cofactor_activity |
| coexpression network | CFinderM001579 | mediator complex, vesicle docking involved in exocytosis, regulation of transcription from RNA polymerase II promoter, RNA_polymerase_II_transcription_cofactor_activity vesicle-mediated transport, nucleotidyltransferase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.