Annotation of co-expression genes

PH01000005G2560's details annotation

1.Annotation

ICBR annotation: RecF/RecN/SMC N terminal domain containing protein, expressed

Blast result AT2G27170 : 1.00E-131
Blast annotation: Structural maintenance of chromosomes (SMC) family protein

2.Location

Scaffold: PH01000005
Strand: +

RegionStartEnd
gene15973091605663
mRNA15973091605663
exon15973091599401
exon16002131600414
exon16011151601202
exon16019481602093
exon16022371602437
exon16025141602697
exon16027901602860
exon16029461603097
exon16033081603476
exon16035671603713
exon16040431604124
exon16047371605663
CDS15993761599401
CDS16002131600414
CDS16011151601202
CDS16019481602093
CDS16022371602437
CDS16025141602697
CDS16027901602860
CDS16029461603097
CDS16033081603476
CDS16035671603713
CDS16040431604124
CDS16047371604927

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000679chromosome organization,
glucose metabolic process,
chromosome,
Glycolysis_/_Gluconeogenesis
coexpression networkCFinderM001425chromosome organization,
negative_regulation_of_transcription,_DNA-templated
chromosome,
RNA_degradation
coexpression networkCFinderM001614nucleotide binding,
ATP binding,
chromosome organization,
valyl-tRNA aminoacylation,
valine-tRNA ligase activity,
GPI anchor biosynthetic process,
chromosome,
endoplasmic reticulum membrane,
DNA metabolic process,
aminoacyl-tRNA_editing_activity
DNA-dependent ATPase activity,
Glycosylphosphatidylinositol(GPI)-anchor_biosynthesis
Homologous_recombination
Aminoacyl-tRNA_biosynthesis
tRNA aminoacylation for protein translation,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF06470.12SMC_hinge994

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding
GO:0005524ATP binding
GO:0005694chromosome
GO:0051276chromosome organization

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.