|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | nucleotide binding, | 0.007883614 | GO:0000166 | | ATP binding, | 0.00935953 | GO:0005524 | | chromosome organization, | 0.009628899 | GO:0051276 | | valyl-tRNA aminoacylation, | 0.009628899 | GO:0006438 | | valine-tRNA ligase activity, | 0.010981742 | GO:0004832 | | GPI anchor biosynthetic process, | 0.013541198 | GO:0006506 | | chromosome, | 0.014410224 | GO:0005694 | | endoplasmic reticulum membrane, | 0.014410224 | GO:0005789 | | DNA metabolic process, | 0.014423047 | GO:0006259 | | aminoacyl-tRNA_editing_activity | 0.016464892 | GO:0002161 | | DNA-dependent ATPase activity, | 0.018652921 | GO:0008094 | | Glycosylphosphatidylinositol(GPI)-anchor_biosynthesis | 0.020193963 | KEGG | | Homologous_recombination | 0.020193963 | KEGG | | Aminoacyl-tRNA_biosynthesis | 0.020193963 | KEGG | | tRNA aminoacylation for protein translation, | 0.029390518 | GO:0006418 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000005G2560 | Structural maintenance of chromosomes (SMC) family protein | AT2G27170 (1.00E-131) | | PH01000025G1090 | - | AT5G46850 (2.50E-25) | | PH01000515G0420 | ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases | AT5G16715 (2.00E-135) | | PH01001057G0520 | DNA repair (Rad51) family protein | AT2G28560 (2.40E-76) | | PH01003694G0020 | polypyrimidine tract-binding protein 1 | AT3G01150 (3.00E-163) | | PH01003963G0090 | compromised recognition of TCV 1 | AT4G36290 (9.00E-155) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000679 | chromosome organization,
glucose metabolic process,
chromosome,
Glycolysis_/_Gluconeogenesis
| details | | CFinderM000780 | Lysine_degradation
Glycosylphosphatidylinositol(GPI)-anchor_biosynthesis
SET Transcription_Regulator(from iTAK)
endoplasmic reticulum membrane,
GPI anchor biosynthetic process,
protein refolding,
| details | | CFinderM001379 | small protein activating enzyme activity,
cellular protein modification process,
Ubiquitin_mediated_proteolysis
proteasome complex,
regulation of protein catabolic process,
Proteasome
enzyme regulator activity,
| details | | CFinderM001425 | chromosome organization,
negative_regulation_of_transcription,_DNA-templated
chromosome,
RNA_degradation
| details |
4.Expression profilings |
