PH01000006G3240's details annotation
1.Annotation
ICBR annotation: protein binding protein, putative, expressed
Blast result AT3G08020 : 1.00E-153
Blast annotation: PHD finger family protein
2.Location
Scaffold: PH01000006
Strand: -
| Region | Start | End |
| gene | 2249921 | 2258325 |
| mRNA | 2249921 | 2258325 |
| exon | 2249921 | 2251393 |
| exon | 2251704 | 2252316 |
| exon | 2253029 | 2253755 |
| exon | 2253836 | 2253914 |
| exon | 2254084 | 2254166 |
| exon | 2254500 | 2254578 |
| exon | 2254688 | 2254776 |
| exon | 2254972 | 2255050 |
| exon | 2255160 | 2255240 |
| exon | 2255359 | 2255405 |
| exon | 2255872 | 2255921 |
| exon | 2256000 | 2256183 |
| exon | 2257627 | 2257915 |
| exon | 2258064 | 2258325 |
| CDS | 2251258 | 2251393 |
| CDS | 2251704 | 2252316 |
| CDS | 2253029 | 2253755 |
| CDS | 2253836 | 2253914 |
| CDS | 2254084 | 2254166 |
| CDS | 2254500 | 2254578 |
| CDS | 2254688 | 2254776 |
| CDS | 2254972 | 2255050 |
| CDS | 2255160 | 2255240 |
| CDS | 2255359 | 2255405 |
| CDS | 2255872 | 2255921 |
| CDS | 2256000 | 2256183 |
| CDS | 2257627 | 2257915 |
| CDS | 2258064 | 2258095 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000898 | WASH_complex cullin-RING ubiquitin ligase complex, PHD Transcription_Regulator(from iTAK) mitotic_spindle_assembly_checkpoint ubiquitin protein ligase binding, cysteine-type peptidase activity, protein serine/threonine phosphatase activity, |
| coexpression network | CFinderM001242 | mitotic_spindle_assembly_checkpoint WASH_complex PHD Transcription_Regulator(from iTAK) N-Glycan_biosynthesis Various_types_of_N-glycan_biosynthesis |
| coexpression network | CFinderM001674 | PHD Transcription_Regulator(from iTAK) sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity, pentose-phosphate shunt, |
| coexpression network | CFinderM001679 | PHD Transcription_Regulator(from iTAK) oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, Butanoate_metabolism nucleotidyltransferase activity, serine-type carboxypeptidase activity, Pyruvate_metabolism Citrate_cycle_(TCA_cycle) Glycolysis_/_Gluconeogenesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | PHD |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00628.28 | PHD | 304 | 359 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.