PH01000010G2530's details annotation
1.Annotation
ICBR annotation: ubiquitin-conjugating enzyme, putative, expressed
Blast result AT1G63800 : 8.20E-68
Blast annotation: ubiquitin-conjugating enzyme 5
2.Location
Scaffold: PH01000010
Strand: -
| Region | Start | End |
| gene | 1752534 | 1754651 |
| mRNA | 1752534 | 1754651 |
| exon | 1752534 | 1752852 |
| exon | 1753116 | 1753244 |
| exon | 1753383 | 1753435 |
| exon | 1753530 | 1753644 |
| exon | 1753971 | 1754050 |
| exon | 1754143 | 1754651 |
| CDS | 1752827 | 1752852 |
| CDS | 1753116 | 1753244 |
| CDS | 1753383 | 1753435 |
| CDS | 1753530 | 1753644 |
| CDS | 1753971 | 1754050 |
| CDS | 1754143 | 1754159 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000341 | exosome_(RNase_complex) COP9_signalosome |
| coexpression network | CFinderM000692 | CMGC_CLK (from iTAK) ornithine_metabolic_process histone deacetylation, ornithine carbamoyltransferase activity, carboxyl- or carbamoyltransferase activity, histone deacetylase activity, Arginine_and_proline_metabolism cellular amino acid metabolic process, |
| coexpression network | CFinderM000693 | ornithine_metabolic_process histone deacetylation, protein import into nucleus, ornithine carbamoyltransferase activity, carboxyl- or carbamoyltransferase activity, histone deacetylase activity, Arginine_and_proline_metabolism cellular amino acid metabolic process, protein transporter activity, amino acid binding, |
| coexpression network | CFinderM000765 | protein import into nucleus, nucleus, nucleobase-containing compound metabolic process, bZIP Transcription_Regulator(from PlantTFDB) Spliceosome |
| coexpression network | CFinderM001466 | nucleobase-containing compound metabolic process, eukaryotic translation initiation factor 3 complex, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00179.25 | UQ_con | 3 | 132 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016881 | acid-amino acid ligase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.