PH01000016G1580's details annotation
1.Annotation
ICBR annotation: exostosin family domain containing protein, expressed
Blast result AT1G27440 : 0.00E+00
Blast annotation: Exostosin family protein
2.Location
Scaffold: PH01000016
Strand: +
| Region | Start | End |
| gene | 1306230 | 1310245 |
| mRNA | 1306230 | 1310245 |
| exon | 1306230 | 1307997 |
| exon | 1308737 | 1309125 |
| exon | 1309288 | 1309529 |
| exon | 1309620 | 1310245 |
| CDS | 1307847 | 1307997 |
| CDS | 1308737 | 1309125 |
| CDS | 1309288 | 1309529 |
| CDS | 1309620 | 1310133 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000433 | Ribosome_biogenesis_in_eukaryotes ATP-dependent helicase activity, threonine-tRNA ligase activity, helicase activity, |
| coexpression network | CFinderM001471 | regulation of translational initiation, eukaryotic translation initiation factor 3 complex, WRKY Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001622 | Aminoacyl-tRNA_biosynthesis tRNA aminoacylation for protein translation, aminoacyl-tRNA ligase activity, cytoplasm, threonyl-tRNA aminoacylation, ATP binding, tyrosine-tRNA ligase activity, threonine-tRNA ligase activity, tRNA aminoacylation, protein catabolic process, ATP-dependent peptidase activity, ligase activity, forming aminoacyl-tRNA and related compounds, |
| coexpression network | CFinderM001684 | heme_a_biosynthetic_process peroxisomal membrane, mitochondrial outer membrane, protein_import_into_peroxisome_matrix negative_regulation_of_transcription,_DNA-templated transcription_corepressor_activity |
| coexpression network | CFinderM001698 | Steroid_biosynthesis endodeoxyribonuclease activity, producing 5'-phosphomonoesters, sterol_24-C-methyltransferase_activity single-stranded DNA binding, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity, WRKY Transcription_Regulator(from PlantTFDB) dephosphorylation, steroid biosynthetic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03016.14 | Exostosin | 69 | 363 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.