PH01000019G2080's details annotation
1.Annotation
ICBR annotation: signal peptide peptidase domain containing protein, expressed
Blast result AT2G03120 : 1.00E-140
Blast annotation: signal peptide peptidase
2.Location
Scaffold: PH01000019
Strand: +
| Region | Start | End |
| gene | 1521907 | 1529572 |
| mRNA | 1521907 | 1529572 |
| exon | 1521907 | 1523185 |
| exon | 1523308 | 1523423 |
| exon | 1523560 | 1523711 |
| exon | 1523813 | 1523898 |
| exon | 1524599 | 1524726 |
| exon | 1524865 | 1524915 |
| exon | 1525770 | 1525856 |
| exon | 1525967 | 1526036 |
| exon | 1527962 | 1528098 |
| exon | 1528206 | 1528283 |
| exon | 1528485 | 1529572 |
| CDS | 1523146 | 1523185 |
| CDS | 1523308 | 1523423 |
| CDS | 1523560 | 1523711 |
| CDS | 1523813 | 1523898 |
| CDS | 1524599 | 1524726 |
| CDS | 1524865 | 1524915 |
| CDS | 1525770 | 1525856 |
| CDS | 1525967 | 1526036 |
| CDS | 1527962 | 1528098 |
| CDS | 1528206 | 1528283 |
| CDS | 1528485 | 1528571 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001608 | pyruvate dehydrogenase complex, dihydrolipoyllysine-residue acetyltransferase activity, pyruvate metabolic process, protein processing, small-subunit processome, integral to membrane, transferase activity, transferring acyl groups, mRNA_surveillance_pathway Pyruvate_metabolism Glycolysis_/_Gluconeogenesis Citrate_cycle_(TCA_cycle) |
| coexpression network | CFinderM001616 | intra-Golgi vesicle-mediated transport, Golgi organization, Golgi_transport_complex mRNA_surveillance_pathway |
| coexpression network | CFinderM001617 | Golgi organization, mRNA_surveillance_pathway solute:hydrogen antiporter activity, integral to membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04258.12 | Peptidase_A22B | 51 | 322 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004190 | aspartic-type endopeptidase activity |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.