PH01000051G1670's details annotation
1.Annotation
ICBR annotation: membrane associated DUF588 domain containing protein, putative, expressed
Blast result AT2G36330 : 9.90E-14
Blast annotation: Uncharacterised protein family (UPF0497)
2.Location
Scaffold: PH01000051
Strand: +
| Region | Start | End |
| gene | 1096641 | 1099213 |
| mRNA | 1096641 | 1099213 |
| exon | 1096641 | 1097918 |
| exon | 1098616 | 1098755 |
| exon | 1098860 | 1099213 |
| CDS | 1097008 | 1097918 |
| CDS | 1098616 | 1098755 |
| CDS | 1098860 | 1099059 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000611 | WNK_NRBP (from iTAK) PHD Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM000857 | RLK-Pelle_WAK_LRK10L-1 (from iTAK) ATP biosynthetic process, ATP_catabolic_process nitrogen compound metabolic process, Oxidative_phosphorylation |
| coexpression network | CFinderM001342 | |
| coexpression network | CFinderM001377 | C2H2 Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001654 | WNK_NRBP (from iTAK) RNA_transport |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04535.11 | DUF588 | 303 | 400 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.