Gene details

Annotation of co-expression genes

PH01000056G1370's details annotation

1.Annotation

ICBR annotation: SNF2 family N-terminal domain containing protein, expressed

Blast result AT2G13370 : 0.00E+00
Blast annotation: chromatin remodeling 5

2.Location

Scaffold: PH01000056
Strand: -

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	details
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000112	SNF2 Transcription_Regulator(from iTAK) chromatin remodeling, ATP-dependent chromatin remodeling, CE8 Carbohydrate_Esterases nucleic acid binding, helicase activity, 5'-3' exoribonuclease activity, nucleosome binding, GT1 GlycosylTransferases cell wall modification, nucleus, cell wall, nucleobase-containing compound metabolic process, exonuclease activity,
coexpression network	CFinderM000151	SNF2 Transcription_Regulator(from iTAK) response to oxidative stress, ATP-dependent helicase activity, helicase activity, peroxidase activity, heme binding, oxidation-reduction process, Phenylalanine_metabolism Phenylpropanoid_biosynthesis Methane_metabolism nucleic acid binding,
coexpression network	CFinderM001316	SNF2 Transcription_Regulator(from iTAK) helicase activity, ATP-dependent helicase activity, ATP binding, monooxygenase activity, fructose-bisphosphate aldolase activity, DNA binding, protein catabolic process,
coexpression network	CFinderM001782	ubiquitin-dependent protein catabolic process, ubiquitin thiolesterase activity, mechanically-gated_ion_channel_activity SNF2 Transcription_Regulator(from iTAK)

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
Transcription_Regulator(from iTAK)	SNF2

8.Protein domain

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
null	null	null	null

10.Gene Ontology

GO Accession	GO Annotation
GO:0003676	nucleic acid binding
GO:0003677	DNA binding
GO:0004386	helicase activity
GO:0005524	ATP binding
GO:0008026	ATP-dependent helicase activity

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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