PH01000067G1430's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G32810 : 6.50E-86
Blast annotation: RING/FYVE/PHD zinc finger superfamily protein
2.Location
Scaffold: PH01000067
Strand: +
| Region | Start | End |
| gene | 1094443 | 1101546 |
| mRNA | 1094443 | 1101546 |
| exon | 1094443 | 1095299 |
| exon | 1095482 | 1095807 |
| exon | 1097195 | 1097374 |
| exon | 1098045 | 1098114 |
| exon | 1098221 | 1099158 |
| exon | 1099249 | 1099404 |
| exon | 1099507 | 1099759 |
| exon | 1099831 | 1099901 |
| exon | 1099983 | 1100105 |
| exon | 1100812 | 1101546 |
| CDS | 1094567 | 1095299 |
| CDS | 1095482 | 1095807 |
| CDS | 1097195 | 1097374 |
| CDS | 1098045 | 1098114 |
| CDS | 1098221 | 1099158 |
| CDS | 1099249 | 1099404 |
| CDS | 1099507 | 1099759 |
| CDS | 1099831 | 1099901 |
| CDS | 1099983 | 1100105 |
| CDS | 1100812 | 1101183 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000534 | CMGC_GSK (from iTAK) transcription factor TFIID complex, intracellular, Basal_transcription_factors Phagosome |
| coexpression network | CFinderM001570 | cis-Golgi network, transcription factor TFIID complex, Basal_transcription_factors |
| coexpression network | CFinderM001606 | LIM Transcription_Regulator(from iTAK) mitochondrial proton-transporting ATP synthase complex, catalytic core F(1), proton-transporting two-sector ATPase complex, catalytic domain, proton-transporting ATP synthase complex, catalytic core F(1), ATP biosynthetic process, ATP metabolic process, ATP_catabolic_process actin cytoskeleton organization, proton transport, ATP synthesis coupled proton transport, ATP hydrolysis coupled proton transport, Phagosome Oxidative_phosphorylation |
| coexpression network | CFinderM001786 | lipid metabolic process, |
| coexpression network | CFinderM001804 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.