PH01000078G0190's details annotation
1.Annotation
ICBR annotation: phosphoserine phosphatase, chloroplast precursor, putative, expressed
Blast result AT1G18640 : 1.20E-70
Blast annotation: 3-phosphoserine phosphatase
2.Location
Scaffold: PH01000078
Strand: +
| Region | Start | End |
| gene | 130171 | 134745 |
| mRNA | 130171 | 134745 |
| exon | 130171 | 130754 |
| exon | 130784 | 131021 |
| exon | 131133 | 131265 |
| exon | 131365 | 131472 |
| exon | 131919 | 132012 |
| exon | 132311 | 132460 |
| exon | 132540 | 132593 |
| exon | 133259 | 134745 |
| CDS | 130629 | 130754 |
| CDS | 130784 | 131021 |
| CDS | 131133 | 131265 |
| CDS | 131365 | 131472 |
| CDS | 131919 | 132012 |
| CDS | 132311 | 132460 |
| CDS | 132540 | 132593 |
| CDS | 133259 | 133384 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000721 | phospholipid transport, phospholipid-translocating ATPase activity, Glycine,_serine_and_threonine_metabolism cation transport, cation-transporting_ATPase_activity magnesium ion binding, phosphoserine phosphatase activity, CAMK_CDPK (from iTAK) integral to membrane, L-serine biosynthetic process, metal ion binding, Methane_metabolism |
| coexpression network | CFinderM000899 | glucose-6-phosphate dehydrogenase activity, glucose metabolic process, galactosyltransferase activity, NADP binding, Glutathione_metabolism Pentose_phosphate_pathway Glycine,_serine_and_threonine_metabolism Phenylalanine,_tyrosine_and_tryptophan_biosynthesis Glycosaminoglycan_biosynthesis_-_chondroitin_sulfate_/_dermatan_sulfate Glycosaminoglycan_biosynthesis_-_heparan_sulfate_/_heparin protein glycosylation, phosphoserine phosphatase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, chorismate mutase activity, chorismate metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12710.6 | HAD | 86 | 233 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Methane metabolism | phosphoserine phosphatase [EC:3.1.3.3] | ko00680 | K01079 |
| 274 Glycine, serine and threonine metabolism | phosphoserine phosphatase [EC:3.1.3.3] | K01079 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004647 | phosphoserine phosphatase activity |
| GO:0006564 | L-serine biosynthetic process |
| GO:0008152 | metabolic process |
| GO:0016791 | phosphatase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.