Gene details

Annotation of co-expression genes

PH01000083G0280's details annotation

1.Annotation

ICBR annotation: expressed_protein

Blast result AT5G47490 : 0.00E+00
Blast annotation: RGPR-related

2.Location

Scaffold: PH01000083
Strand: -

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000227	Valine,_leucine_and_isoleucine_biosynthesis COPII_vesicle_coating intracellular, translational elongation,
coexpression network	CFinderM000558	Whirly Transcription_Regulator(from PlantTFDB) COPII_vesicle_coating aminoacyl-tRNA hydrolase activity, intracellular,
coexpression network	CFinderM001171	COPII_vesicle_coating
coexpression network	CFinderM001428	nuclear mRNA splicing, via spliceosome, spliceosomal complex, cell volume homeostasis, COPII_vesicle_coating lysine biosynthetic process via diaminopimelate, chloride transport, dihydrodipicolinate synthase activity, snRNA_binding Lysine_biosynthesis
coexpression network	CFinderM001680	COPII_vesicle_coating SET Transcription_Regulator(from iTAK) potassium_ion_transmembrane_transport

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
null	null	null	null

10.Gene Ontology

GO Accession	GO Annotation
GO:0048208	COPII vesicle coating

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

    © 2017 All Rights Reserved.