Annotation of co-expression genes

PH01000087G0050's details annotation

1.Annotation

ICBR annotation: zinc finger, RING-type, putative, expressed

Blast result AT3G47160 : 1.30E-86
Blast annotation: RING/U-box superfamily protein

2.Location

Scaffold: PH01000087
Strand: -

RegionStartEnd
gene2325827925
mRNA2325827925
exon2325824578
exon2550225739
exon2583225927
exon2603426193
exon2624126322
exon2643827925
CDS2436824578
CDS2550225739
CDS2583225927
CDS2603426193
CDS2624126322
CDS2643826517

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000179Ribosome_biogenesis_in_eukaryotes
aspartyl-tRNA aminoacylation,
aspartate-tRNA ligase activity,
tRNA aminoacylation for protein translation,
coexpression networkCFinderM001019protein transport,
coexpression networkCFinderM001511nuclear pore,
nucleocytoplasmic transport,
RNA processing,
Ribosome_biogenesis_in_eukaryotes
RNA_transport
coexpression networkCFinderM001719nuclear pore,
RNA modification,
pseudouridine synthesis,
pseudouridine synthase activity,
Ribosome_biogenesis_in_eukaryotes
RNA_transport

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13920.5zf-C3HC4_3189235

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding
GO:0008270zinc ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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