CFinderM001719's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
nuclear pore,0.006733037GO:0005643
RNA modification,0.007019611GO:0009451
pseudouridine synthesis,0.007019611GO:0001522
pseudouridine synthase activity,0.03899784GO:0009982
Ribosome_biogenesis_in_eukaryotes0.044179879KEGG
RNA_transport0.044179879KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000004G3220structural constituent of nuclear poreAT2G45000 (4.80E-37)
PH01000019G1740-AT5G41190 (3.00E-147)
PH01000087G0050RING/U-box superfamily proteinAT3G47160 (1.30E-86)
PH01000323G0970elongator protein 2AT1G49540 (0.00E+00)
PH01001148G0360Acyl-CoA N-acyltransferases (NAT) superfamily proteinAT5G16800 (1.00E-49)
PH01004821G0050Pseudouridine synthase family proteinAT1G20370 (2.00E-142)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000179Ribosome_biogenesis_in_eukaryotes
aspartyl-tRNA aminoacylation,
aspartate-tRNA ligase activity,
tRNA aminoacylation for protein translation,
details
CFinderM000940nucleic acid binding,
Ribosome_biogenesis_in_eukaryotes
details
CFinderM001019protein transport,
details
CFinderM001079SOS_response
DNA metabolic process,
cellular protein metabolic process,
details
CFinderM001510Ribosome_biogenesis_in_eukaryotes
RNA processing,
acid-amino acid ligase activity,
details
CFinderM001511nuclear pore,
nucleocytoplasmic transport,
RNA processing,
Ribosome_biogenesis_in_eukaryotes
RNA_transport
details
CFinderM001582cellular_homeostasis
Peroxisome
mitochondrial outer membrane,
protein methylation,
details
CFinderM001718phosphoribosyl-AMP cyclohydrolase activity,
histidine biosynthetic process,
RNA modification,
pseudouridine synthesis,
nuclear pore,
details
CFinderM001720RNA_polymerase_II_transcription_cofactor_activity
NAD+ ADP-ribosyltransferase activity,
mediator complex,
nuclear pore,
regulation of transcription from RNA polymerase II promoter,
protein transport,
details
CFinderM001722GTP_catabolic_process
small GTPase mediated signal transduction,
protein transport,
signal transduction,
GTPase activity,
GTP binding,
large ribosomal subunit,
intracellular,
membrane,
nucleocytoplasmic transport,
details
CFinderM001761large ribosomal subunit,
intracellular,
details
CFinderM001848Valine,_leucine_and_isoleucine_biosynthesis
C5-Branched_dibasic_acid_metabolism
SBP Transcription_Regulator(from PlantTFDB)
Pantothenate_and_CoA_biosynthesis
Butanoate_metabolism
branched chain family amino acid biosynthetic process,
acetolactate synthase activity,
details

4.Expression profilings