Gene details

Annotation of co-expression genes

PH01004821G0050's details annotation

1.Annotation

ICBR annotation: tRNA pseudouridine synthase family protein, putative, expressed

Blast result AT1G20370 : 2.00E-142
Blast annotation: Pseudouridine synthase family protein

2.Location

Scaffold: PH01004821
Strand: +

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM001718	phosphoribosyl-AMP cyclohydrolase activity, histidine biosynthetic process, RNA modification, pseudouridine synthesis, nuclear pore,
coexpression network	CFinderM001719	nuclear pore, RNA modification, pseudouridine synthesis, pseudouridine synthase activity, Ribosome_biogenesis_in_eukaryotes RNA_transport

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start
PF01416.19	PseudoU_synth_1	378	483

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
null	null	null	null

10.Gene Ontology

GO Accession	GO Annotation
GO:0001522	pseudouridine synthesis
GO:0003723	RNA binding
GO:0009451	RNA modification
GO:0009982	pseudouridine synthase activity

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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