CFinderM001079's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
SOS_response0.017475214GO:0009432
DNA metabolic process,0.03363906GO:0006259
cellular protein metabolic process,0.04885828GO:0044267

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000019G1740-AT5G41190 (3.00E-147)
PH01000031G0300recA DNA recombination family proteinAT2G19490 (3.00E-143)
PH01000181G1330ubiquitin-conjugating enzyme 32AT3G17000 (7.90E-92)
PH01000183G1190putative mitochondrial RNA helicase 2AT3G22330 (2.00E-156)
PH01000708G0600Tetratricopeptide repeat (TPR)-like superfamily proteinAT1G60770 (3.00E-170)
PH01003962G0170TCP-1/cpn60 chaperonin family proteinAT5G26360 (0.00E+00)
PH01006260G0050-- (-)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000144protein binding,
acid-amino acid ligase activity,
details
CFinderM000587protein binding,
acid-amino acid ligase activity,
details
CFinderM000940nucleic acid binding,
Ribosome_biogenesis_in_eukaryotes
details
CFinderM000949rRNA processing,
RNA methylation,
methylation,
small-subunit processome,
methyltransferase activity,
details
CFinderM001110Ubiquitin_mediated_proteolysis
acid-amino acid ligase activity,
protein neddylation,
cellular protein modification process,
small protein activating enzyme activity,
details
CFinderM001131details
CFinderM001414PHD Transcription_Regulator(from iTAK)
details
CFinderM001415PHD Transcription_Regulator(from iTAK)
details
CFinderM001444nucleolus,
SNARE_interactions_in_vesicular_transport
Homologous_recombination
SOS_response
DNA metabolic process,
ribosome biogenesis,
single-stranded DNA binding,
DNA-dependent ATPase activity,
details
CFinderM001452'de novo' IMP biosynthetic process,
5-(carboxyamino)imidazole_ribonucleotide_mutase_activity
details
CFinderM001510Ribosome_biogenesis_in_eukaryotes
RNA processing,
acid-amino acid ligase activity,
details
CFinderM001519details
CFinderM001718phosphoribosyl-AMP cyclohydrolase activity,
histidine biosynthetic process,
RNA modification,
pseudouridine synthesis,
nuclear pore,
details
CFinderM001719nuclear pore,
RNA modification,
pseudouridine synthesis,
pseudouridine synthase activity,
Ribosome_biogenesis_in_eukaryotes
RNA_transport
details

4.Expression profilings