PH01001148G0360's details annotation
1.Annotation
ICBR annotation: GCN5-related N-acetyltransferase, putative, expressed
Blast result AT5G16800 : 1.00E-49
Blast annotation: Acyl-CoA N-acyltransferases (NAT) superfamily protein
2.Location
Scaffold: PH01001148
Strand: +
| Region | Start | End |
| gene | 206138 | 212517 |
| mRNA | 206138 | 212517 |
| exon | 206138 | 207285 |
| exon | 208214 | 208306 |
| exon | 208466 | 208705 |
| exon | 208926 | 209099 |
| exon | 212173 | 212517 |
| CDS | 207092 | 207285 |
| CDS | 208214 | 208306 |
| CDS | 208466 | 208705 |
| CDS | 208926 | 209099 |
| CDS | 212173 | 212356 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001582 | cellular_homeostasis Peroxisome mitochondrial outer membrane, protein methylation, |
| coexpression network | CFinderM001719 | nuclear pore, RNA modification, pseudouridine synthesis, pseudouridine synthase activity, Ribosome_biogenesis_in_eukaryotes RNA_transport |
| coexpression network | CFinderM001722 | GTP_catabolic_process small GTPase mediated signal transduction, protein transport, signal transduction, GTPase activity, GTP binding, large ribosomal subunit, intracellular, membrane, nucleocytoplasmic transport, |
| coexpression network | CFinderM001761 | large ribosomal subunit, intracellular, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.