PH01000087G0110's details annotation
1.Annotation
ICBR annotation: protein kinase, putative, expressed
Blast result AT3G09010 : 8.00E-109
Blast annotation: Protein kinase superfamily protein
2.Location
Scaffold: PH01000087
Strand: +
| Region | Start | End |
| gene | 62199 | 64948 |
| mRNA | 62199 | 64948 |
| exon | 62199 | 62394 |
| exon | 62719 | 62834 |
| exon | 62958 | 63168 |
| exon | 63275 | 63512 |
| exon | 63680 | 63827 |
| exon | 64416 | 64948 |
| CDS | 62331 | 62394 |
| CDS | 62719 | 62834 |
| CDS | 62958 | 63168 |
| CDS | 63275 | 63512 |
| CDS | 63680 | 63827 |
| CDS | 64416 | 64784 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000567 | C2H2 Transcription_Regulator(from PlantTFDB) Peroxisome Mismatch_repair |
| coexpression network | CFinderM000568 | nuclear chromosome, Mismatch_repair Mismatch_repair mRNA_surveillance_pathway |
| coexpression network | CFinderM000940 | nucleic acid binding, Ribosome_biogenesis_in_eukaryotes |
| coexpression network | CFinderM001166 | DNA_replication Nucleotide_excision_repair Mismatch_repair Riboflavin_metabolism histone acetylation, chromatin modification, chromatin silencing at telomere, |
| coexpression network | CFinderM001427 | outer membrane, RLK-Pelle_DLSV (from iTAK) Protein_processing_in_endoplasmic_reticulum |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 45 | 318 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.