PH01000105G0750's details annotation
1.Annotation
ICBR annotation: ulp1 protease family protein, putative, expressed
Blast result AT1G10570 : 7.90E-37
Blast annotation: Cysteine proteinases superfamily protein
2.Location
Scaffold: PH01000105
Strand: -
| Region | Start | End |
| gene | 496026 | 501073 |
| mRNA | 496026 | 501073 |
| exon | 496026 | 497637 |
| exon | 497751 | 497858 |
| exon | 498073 | 498184 |
| exon | 498382 | 498504 |
| exon | 499054 | 501073 |
| CDS | 497089 | 497637 |
| CDS | 497751 | 497858 |
| CDS | 498073 | 498184 |
| CDS | 498382 | 498504 |
| CDS | 499054 | 499079 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000898 | WASH_complex cullin-RING ubiquitin ligase complex, PHD Transcription_Regulator(from iTAK) mitotic_spindle_assembly_checkpoint ubiquitin protein ligase binding, cysteine-type peptidase activity, protein serine/threonine phosphatase activity, |
| coexpression network | CFinderM001015 | DNA primase activity, |
| coexpression network | CFinderM001242 | mitotic_spindle_assembly_checkpoint WASH_complex PHD Transcription_Regulator(from iTAK) N-Glycan_biosynthesis Various_types_of_N-glycan_biosynthesis |
| coexpression network | CFinderM001360 | cysteine-type peptidase activity, galactosyltransferase activity, protein glycosylation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02902.18 | Peptidase_C48 | 10 | 132 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006508 | proteolysis |
| GO:0008234 | cysteine-type peptidase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.