PH01000106G1460's details annotation
1.Annotation
ICBR annotation: mannose-1-phosphate guanyltransferase, putative, expressed
Blast result AT1G74910 : 8.90E-76
Blast annotation: ADP-glucose pyrophosphorylase family protein
2.Location
Scaffold: PH01000106
Strand: +
| Region | Start | End |
| gene | 1048667 | 1052407 |
| mRNA | 1048667 | 1052407 |
| exon | 1048667 | 1048813 |
| exon | 1049717 | 1049765 |
| exon | 1050731 | 1050847 |
| exon | 1050921 | 1051068 |
| exon | 1051240 | 1051332 |
| exon | 1051957 | 1051999 |
| exon | 1052089 | 1052407 |
| CDS | 1048747 | 1048813 |
| CDS | 1049717 | 1049765 |
| CDS | 1050731 | 1050847 |
| CDS | 1050921 | 1051068 |
| CDS | 1051240 | 1051332 |
| CDS | 1051957 | 1051999 |
| CDS | 1052089 | 1052189 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001189 | GT31 GlycosylTransferases RNA processing, protein glycosylation, Fructose_and_mannose_metabolism mRNA_surveillance_pathway Amino_sugar_and_nucleotide_sugar_metabolism galactosyltransferase activity, transferase activity, |
| coexpression network | CFinderM001775 | myosin complex, TBP-class_protein_binding Fructose_and_mannose_metabolism Basal_transcription_factors Amino_sugar_and_nucleotide_sugar_metabolism motor activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00132.23 | Hexapep | 110 | 141 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Fructose and mannose metabolism | mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] | ko00051 | K00966 |
| Amino sugar and nucleotide sugar metabolism | mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] | ko00520 | K00966 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016740 | transferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.