PH01000106G1470's details annotation
1.Annotation
ICBR annotation: cyclin, putative, expressed
Blast result AT5G43080 : 2.50E-41
Blast annotation: Cyclin A3;1
2.Location
Scaffold: PH01000106
Strand: -
| Region | Start | End |
| gene | 1052615 | 1055081 |
| mRNA | 1052615 | 1055081 |
| exon | 1052615 | 1053034 |
| exon | 1053115 | 1053249 |
| exon | 1053326 | 1053478 |
| exon | 1053559 | 1053589 |
| exon | 1053757 | 1053833 |
| exon | 1054577 | 1055081 |
| CDS | 1052954 | 1053034 |
| CDS | 1053115 | 1053249 |
| CDS | 1053326 | 1053478 |
| CDS | 1053559 | 1053589 |
| CDS | 1053757 | 1053833 |
| CDS | 1054577 | 1054774 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000872 | SWI/SNF-BAF60b Transcription_Regulator(from iTAK) ER to Golgi vesicle-mediated transport, regulation_of_cell_cycle regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity protein_kinase_binding |
| coexpression network | CFinderM001286 | GH31 Glycoside_Hydrolases ER_membrane_protein_complex phosphoacetylglucosamine mutase activity, RLK-Pelle_RLCK-VIIa-2 (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02984.18 | Cyclin_C | 85 | 207 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000079 | regulation of cyclin-dependent protein serine/threonine kinase activity |
| GO:0005634 | nucleus |
| GO:0019901 | protein kinase binding |
| GO:0051726 | regulation of cell cycle |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.