Gene details

Annotation of co-expression genes

PH01000109G1220's details annotation

1.Annotation

ICBR annotation: vacuolar protein sorting-associated protein 28 homolog 2, putative, expressed

Blast result AT4G21560 : 7.40E-68
Blast annotation: vacuolar protein sorting-associated protein 28 homolog 1

2.Location

Scaffold: PH01000109
Strand: +

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000195	pyridoxine biosynthetic process, S-adenosylmethionine_biosynthetic_process proteolysis, pyridoxamine-phosphate oxidase activity, oxidoreductase activity, acting on the CH-NH2 group of donors, methionine adenosyltransferase activity, Endocytosis aminopeptidase activity,
coexpression network	CFinderM000324	pyridoxine biosynthetic process, S-adenosylmethionine_biosynthetic_process GT8 GlycosylTransferases pyridoxamine-phosphate oxidase activity, oxidoreductase activity, acting on the CH-NH2 group of donors, methionine adenosyltransferase activity,
coexpression network	CFinderM000864	mitochondrial inner membrane presequence translocase complex, P-P-bond-hydrolysis-driven protein transmembrane transporter activity, Endocytosis

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start
PF03997.11	VPS28	18	208

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
Endocytosis	ESCRT-I complex subunit VPS28	ko04144	K12184

10.Gene Ontology

GO Accession	GO Annotation
null	null

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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