PH01000122G1500's details annotation
1.Annotation
ICBR annotation: ANT1, putative, expressed
Blast result AT3G11900 : 3.00E-114
Blast annotation: aromatic and neutral transporter 1
2.Location
Scaffold: PH01000122
Strand: +
| Region | Start | End |
| gene | 884662 | 888063 |
| mRNA | 884662 | 888063 |
| exon | 884662 | 886126 |
| exon | 886286 | 886954 |
| exon | 887052 | 888063 |
| CDS | 885926 | 886126 |
| CDS | 886286 | 886954 |
| CDS | 887052 | 887447 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000258 | cellular protein modification process, protein neddylation, phosphopyruvate hydratase complex, NF-YB Transcription_Regulator(from PlantTFDB) PLATZ Transcription_Regulator(from iTAK) RLK-Pelle_LRR-VI-2 (from iTAK) |
| coexpression network | CFinderM000836 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, cellular protein modification process, nitrogen compound metabolic process, response to stress, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01490.17 | Aa_trans | 16 | 417 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.