PH01000123G0830's details annotation
1.Annotation
ICBR annotation: copper-transporting ATPase, putative, expressed
Blast result AT5G44790 : 0.00E+00
Blast annotation: copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1)
2.Location
Scaffold: PH01000123
Strand: +
| Region | Start | End |
| gene | 561914 | 567810 |
| mRNA | 561914 | 567810 |
| exon | 561914 | 562457 |
| exon | 563120 | 563734 |
| exon | 563993 | 564422 |
| exon | 564646 | 564971 |
| exon | 565462 | 565520 |
| exon | 565604 | 565946 |
| exon | 566049 | 566249 |
| exon | 566362 | 566619 |
| exon | 566800 | 567201 |
| exon | 567566 | 567810 |
| CDS | 562185 | 562457 |
| CDS | 563120 | 563734 |
| CDS | 563993 | 564422 |
| CDS | 564646 | 564971 |
| CDS | 565462 | 565520 |
| CDS | 565604 | 565946 |
| CDS | 566049 | 566249 |
| CDS | 566362 | 566619 |
| CDS | 566800 | 567201 |
| CDS | 567566 | 567709 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001716 | Amino_sugar_and_nucleotide_sugar_metabolism cellular metabolic process, GT8 GlycosylTransferases coenzyme binding, copper ion transport, copper-transporting_ATPase_activity Starch_and_sucrose_metabolism Ubiquitin_mediated_proteolysis |
| coexpression network | CFinderM001781 | RLK-Pelle_LRR-XV (from iTAK) RNA_degradation copper ion transport, C3H Transcription_Regulator(from PlantTFDB) copper-transporting_ATPase_activity protein binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00403.25 | HMA | 45 | 105 |
| PF00403.25 | HMA | 127 | 187 |
| PF00122.19 | E1-E2_ATPase | 428 | 625 |
| PF00702.25 | Hydrolase | 642 | 881 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0005507 | copper ion binding |
| GO:0006812 | cation transport |
| GO:0006825 | copper ion transport |
| GO:0016021 | integral to membrane |
| GO:0019829 | cation-transporting ATPase activity |
| GO:0030001 | metal ion transport |
| GO:0043682 | copper-transporting ATPase activity |
| GO:0046872 | metal ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.