PH01000144G1250's details annotation
1.Annotation
ICBR annotation: GHMP kinases ATP-binding protein, putative, expressed
Blast result AT3G54250 : 7.00E-155
Blast annotation: GHMP kinase family protein
2.Location
Scaffold: PH01000144
Strand: -
| Region | Start | End |
| gene | 721240 | 727091 |
| mRNA | 721240 | 727091 |
| exon | 721240 | 721548 |
| exon | 721641 | 721762 |
| exon | 722661 | 722793 |
| exon | 722881 | 722951 |
| exon | 723171 | 723257 |
| exon | 723459 | 723539 |
| exon | 723626 | 723689 |
| exon | 723862 | 723925 |
| exon | 724568 | 724766 |
| exon | 725380 | 727091 |
| CDS | 721326 | 721548 |
| CDS | 721641 | 721762 |
| CDS | 722661 | 722793 |
| CDS | 722881 | 722951 |
| CDS | 723171 | 723257 |
| CDS | 723459 | 723539 |
| CDS | 723626 | 723689 |
| CDS | 723862 | 723925 |
| CDS | 724568 | 724766 |
| CDS | 725380 | 725595 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000496 | cullin-RING ubiquitin ligase complex, ubiquitin protein ligase binding, Pseudo ARR-B Transcription_Regulator(from iTAK) ubiquitin-dependent protein catabolic process, diphosphomevalonate decarboxylase activity, L,L-diaminopimelate_aminotransferase_activity Citrate_cycle_(TCA_cycle) Pyruvate_metabolism |
| coexpression network | CFinderM000593 | nicotinate nucleotide salvage, diphosphomevalonate decarboxylase activity, nicotinate phosphoribosyltransferase activity, nicotinate-nucleotide diphosphorylase (carboxylating) activity, NAD biosynthetic process, Nicotinate_and_nicotinamide_metabolism isoprenoid biosynthetic process, Terpenoid_backbone_biosynthesis large ribosomal subunit, |
| coexpression network | CFinderM001524 | diphosphomevalonate decarboxylase activity, Peroxisome 6-phosphofructokinase complex, Terpenoid_backbone_biosynthesis RWP-RK Transcription_Regulator(from iTAK) Nin-like Transcription_Regulator(from PlantTFDB) 6-phosphofructokinase activity, GRAS Transcription_Regulator(from PlantTFDB) isoprenoid biosynthetic process, glycolysis, |
| coexpression network | CFinderM001840 | transcription factor TFIIF complex, STE_STE11 (from iTAK) diphosphomevalonate decarboxylase activity, ATP binding, histone deacetylase activity, histone deacetylation, transcription initiation from RNA polymerase II promoter, Basal_transcription_factors Terpenoid_backbone_biosynthesis protein catabolic process, isoprenoid biosynthetic process, Endocytosis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00288.25 | GHMP_kinases_N | 115 | 173 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Terpenoid backbone biosynthesis | diphosphomevalonate decarboxylase [EC:4.1.1.33] | ko00900 | K01597 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004163 | diphosphomevalonate decarboxylase activity |
| GO:0005524 | ATP binding |
| GO:0008299 | isoprenoid biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.