Annotation of co-expression genes

PH01000151G1330's details annotation

1.Annotation

ICBR annotation: MLA10, putative, expressed

Blast result AT3G46730 : 1.90E-70
Blast annotation: NB-ARC domain-containing disease resistance protein

2.Location

Scaffold: PH01000151
Strand: -

RegionStartEnd
gene10141031017866
mRNA10141031017866
exon10141031016189
exon10163661017866
CDS10142331016189
CDS10163661017183

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001010RLK-Pelle_PERK-2 (from iTAK)
ethylene mediated signaling pathway,
endoplasmic reticulum membrane,
Plant_hormone_signal_transduction
protein histidine kinase activity,
Others Transcription_Regulator(from iTAK)
two-component sensor activity,
protein tyrosine kinase activity,
two-component signal transduction system (phosphorelay),
EIL Transcription_Regulator(from PlantTFDB)
two-component response regulator activity,
signal transducer activity,
sulfate assimilation,
coexpression networkCFinderM001053endoplasmic reticulum membrane,
ethylene mediated signaling pathway,
Others Transcription_Regulator(from iTAK)
protein histidine kinase activity,
Plant_hormone_signal_transduction
two-component sensor activity,
signal transducer activity,
two-component response regulator activity,
coexpression networkCFinderM001304nucleoside-triphosphatase activity,
ATPase activity, coupled to transmembrane movement of substances,
GT47 GlycosylTransferases
RLK-Pelle_CR4L (from iTAK)
ABC_transporters
ATPase activity,
ATP binding,
nucleotide binding,
SNF2 Transcription_Regulator(from iTAK)
coexpression networkCFinderM001432RLK-Pelle_CR4L (from iTAK)
ubiquitin ligase complex,
Ubiquitin_mediated_proteolysis
regulation of ARF GTPase activity,
coexpression networkCFinderM001826regulation of ARF GTPase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00931.21NB-ARC193458

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0006952defense response
GO:0043531ADP binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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