PH01000180G0930's details annotation
1.Annotation
ICBR annotation: elongation factor, putative, expressed
Blast result AT1G06220 : 0.00E+00
Blast annotation: Ribosomal protein S5/Elongation factor G/III/V family protein
2.Location
Scaffold: PH01000180
Strand: +
| Region | Start | End |
| gene | 650668 | 657777 |
| mRNA | 650668 | 657777 |
| exon | 650668 | 651584 |
| exon | 654027 | 654095 |
| exon | 654179 | 655372 |
| exon | 655455 | 655553 |
| exon | 655678 | 655836 |
| exon | 656077 | 656162 |
| exon | 656256 | 656454 |
| exon | 656600 | 656710 |
| exon | 656798 | 657004 |
| exon | 657106 | 657777 |
| CDS | 650823 | 651584 |
| CDS | 654027 | 654095 |
| CDS | 654179 | 655372 |
| CDS | 655455 | 655553 |
| CDS | 655678 | 655836 |
| CDS | 656077 | 656162 |
| CDS | 656256 | 656454 |
| CDS | 656600 | 656710 |
| CDS | 656798 | 657004 |
| CDS | 657106 | 657204 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000950 | ER to Golgi vesicle-mediated transport, Mismatch_repair Golgi membrane, cis-Golgi network, SNARE_interactions_in_vesicular_transport Mismatch_repair |
| coexpression network | CFinderM001646 | Tify Transcription_Regulator(from iTAK) mRNA_catabolic_process polyribonucleotide_nucleotidyltransferase_activity 3'-5'-exoribonuclease activity, RNA processing, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16004.4 | EFTUD2 | 3 | 120 |
| PF00009.26 | GTP_EFTU | 145 | 458 |
| PF03144.24 | GTP_EFTU_D2 | 513 | 587 |
| PF03764.17 | EFG_IV | 730 | 845 |
| PF00679.23 | EFG_C | 847 | 935 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Spliceosome | 116 kDa U5 small nuclear ribonucleoprotein component | ko03041 | K12852 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003924 | GTPase activity |
| GO:0005525 | GTP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.