PH01000240G0950's details annotation
1.Annotation
ICBR annotation: aspartic proteinase nepenthesin-2 precursor, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000240
Strand: +
| Region | Start | End |
| gene | 602259 | 605081 |
| mRNA | 602259 | 605081 |
| exon | 602259 | 602527 |
| exon | 602625 | 602734 |
| exon | 602816 | 602866 |
| exon | 603062 | 603191 |
| exon | 604020 | 605081 |
| CDS | 602424 | 602527 |
| CDS | 602625 | 602734 |
| CDS | 602816 | 602866 |
| CDS | 603062 | 603191 |
| CDS | 604020 | 604389 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000323 | Diterpenoid_biosynthesis Lysine_degradation SET Transcription_Regulator(from iTAK) histone_methylation electron carrier activity, heme binding, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, iron ion binding, histone_lysine_methylation histone_binding histone-lysine N-methyltransferase activity, oxidation-reduction process, |
| coexpression network | CFinderM000341 | exosome_(RNase_complex) COP9_signalosome |
| coexpression network | CFinderM000693 | ornithine_metabolic_process histone deacetylation, protein import into nucleus, ornithine carbamoyltransferase activity, carboxyl- or carbamoyltransferase activity, histone deacetylase activity, Arginine_and_proline_metabolism cellular amino acid metabolic process, protein transporter activity, amino acid binding, |
| coexpression network | CFinderM001362 | Protein_processing_in_endoplasmic_reticulum mannose biosynthetic process, Lysine_degradation SET Transcription_Regulator(from iTAK) histone_methylation phosphomannomutase activity, histone_lysine_methylation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.