Annotation of co-expression genes

PH01000249G0140's details annotation

1.Annotation

ICBR annotation: dihydrodipicolinate synthase, chloroplast precursor, putative, expressed

Blast result AT2G45440 : 9.00E-133
Blast annotation: dihydrodipicolinate synthase

2.Location

Scaffold: PH01000249
Strand: +

RegionStartEnd
gene9000797227
mRNA9000797227
exon9000791789
exon9267092907
exon9328493381
exon9600297227
CDS9166891789
CDS9267092907
CDS9328493381
CDS9600296929

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000300nuclear mRNA splicing, via spliceosome,
dihydrodipicolinate synthase activity,
lysine biosynthetic process via diaminopimelate,
Lysine_biosynthesis
spliceosomal complex,
lyase activity,
snRNA_binding
rRNA binding,
metabolic process,
coexpression networkCFinderM000826dihydrodipicolinate synthase activity,
Lysine_biosynthesis
lysine biosynthetic process via diaminopimelate,
spliceosomal complex,
nuclear mRNA splicing, via spliceosome,
lyase activity,
GT48 GlycosylTransferases
C3H Transcription_Regulator(from PlantTFDB)
rRNA binding,
coexpression networkCFinderM000985nuclear mRNA splicing, via spliceosome,
RLK-Pelle_RLCK-XII-1 (from iTAK)
spliceosomal complex,
cis-Golgi network,
Golgi membrane,
lysine biosynthetic process via diaminopimelate,
ER to Golgi vesicle-mediated transport,
dihydrodipicolinate synthase activity,
snRNA_binding
SNARE_interactions_in_vesicular_transport
Lysine_biosynthesis
protein binding,
lyase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF04889.11Cwf_Cwc_15144
PF00701.21DHDPS161435

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Lysine biosynthesis4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]ko00300K01714

10.Gene Ontology

GO AccessionGO Annotation
GO:0000398mRNA splicing, via spliceosome
GO:0003824catalytic activity
GO:0005681spliceosomal complex
GO:0008152metabolic process
GO:00088404-hydroxy-tetrahydrodipicolinate synthase
GO:0009089lysine biosynthetic process via diaminopimelate
GO:0016829lyase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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