CFinderM000985's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
nuclear mRNA splicing, via spliceosome,0.000261927GO:0000398
RLK-Pelle_RLCK-XII-1 (from iTAK)0.002186065GFam
spliceosomal complex,0.013344261GO:0005681
cis-Golgi network,0.013344261GO:0005801
Golgi membrane,0.013344261GO:0000139
lysine biosynthetic process via diaminopimelate,0.014971734GO:0009089
ER to Golgi vesicle-mediated transport,0.019110829GO:0006888
dihydrodipicolinate synthase activity,0.019221354GO:0008840
snRNA_binding0.025616458GO:0017069
SNARE_interactions_in_vesicular_transport0.027274615KEGG
Lysine_biosynthesis0.027274615KEGG
protein binding,0.038578958GO:0005515
lyase activity,0.049524976GO:0016829

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000037G0050COP9-signalosome 5BAT1G71230 (5.30E-98)
PH01000241G0710Transducin family protein / WD-40 repeat family proteinAT2G19520 (3.00E-163)
PH01000249G0140dihydrodipicolinate synthaseAT2G45440 (9.00E-133)
PH01000322G1150U2 small nuclear ribonucleoprotein BAT2G30260 (1.80E-76)
PH01000816G0510BR-signaling kinase 1AT4G35230 (0.00E+00)
PH01002275G0020golgi snare 11AT1G15880 (1.60E-82)
PH01005947G0010Ankyrin repeat family proteinAT2G31820 (2.00E-178)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000300nuclear mRNA splicing, via spliceosome,
dihydrodipicolinate synthase activity,
lysine biosynthetic process via diaminopimelate,
Lysine_biosynthesis
spliceosomal complex,
lyase activity,
snRNA_binding
rRNA binding,
metabolic process,
details
CFinderM000320nicotinate phosphoribosyltransferase activity,
nicotinate-nucleotide diphosphorylase (carboxylating) activity,
adenylylsulfate_kinase_activity
nicotinate nucleotide salvage,
omega_peptidase_activity
SNARE_interactions_in_vesicular_transport
Nicotinate_and_nicotinamide_metabolism
Nitrogen_metabolism
sulfate assimilation,
NAD biosynthetic process,
nucleoside-triphosphatase activity,
metal ion transmembrane transporter activity,
ER to Golgi vesicle-mediated transport,
magnesium_ion_transport
transmembrane transport,
cis-Golgi network,
Golgi membrane,
details
CFinderM000826dihydrodipicolinate synthase activity,
Lysine_biosynthesis
lysine biosynthetic process via diaminopimelate,
spliceosomal complex,
nuclear mRNA splicing, via spliceosome,
lyase activity,
GT48 GlycosylTransferases
C3H Transcription_Regulator(from PlantTFDB)
rRNA binding,
details
CFinderM000950ER to Golgi vesicle-mediated transport,
Mismatch_repair
Golgi membrane,
cis-Golgi network,
SNARE_interactions_in_vesicular_transport
Mismatch_repair
details
CFinderM001010RLK-Pelle_PERK-2 (from iTAK)
ethylene mediated signaling pathway,
endoplasmic reticulum membrane,
Plant_hormone_signal_transduction
protein histidine kinase activity,
Others Transcription_Regulator(from iTAK)
two-component sensor activity,
protein tyrosine kinase activity,
two-component signal transduction system (phosphorelay),
EIL Transcription_Regulator(from PlantTFDB)
two-component response regulator activity,
signal transducer activity,
sulfate assimilation,
details

4.Expression profilings