PH01002275G0020's details annotation
1.Annotation
ICBR annotation: vesicle transport v-SNARE protein, putative, expressed
Blast result AT1G15880 : 1.60E-82
Blast annotation: golgi snare 11
2.Location
Scaffold: PH01002275
Strand: +
| Region | Start | End |
| gene | 8338 | 12165 |
| mRNA | 8338 | 12165 |
| exon | 8338 | 8848 |
| exon | 9893 | 10021 |
| exon | 10233 | 10397 |
| exon | 11404 | 12165 |
| CDS | 8813 | 8848 |
| CDS | 9893 | 10021 |
| CDS | 10233 | 10397 |
| CDS | 11404 | 11574 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000320 | nicotinate phosphoribosyltransferase activity, nicotinate-nucleotide diphosphorylase (carboxylating) activity, adenylylsulfate_kinase_activity nicotinate nucleotide salvage, omega_peptidase_activity SNARE_interactions_in_vesicular_transport Nicotinate_and_nicotinamide_metabolism Nitrogen_metabolism sulfate assimilation, NAD biosynthetic process, nucleoside-triphosphatase activity, metal ion transmembrane transporter activity, ER to Golgi vesicle-mediated transport, magnesium_ion_transport transmembrane transport, cis-Golgi network, Golgi membrane, |
| coexpression network | CFinderM000950 | ER to Golgi vesicle-mediated transport, Mismatch_repair Golgi membrane, cis-Golgi network, SNARE_interactions_in_vesicular_transport Mismatch_repair |
| coexpression network | CFinderM000985 | nuclear mRNA splicing, via spliceosome, RLK-Pelle_RLCK-XII-1 (from iTAK) spliceosomal complex, cis-Golgi network, Golgi membrane, lysine biosynthetic process via diaminopimelate, ER to Golgi vesicle-mediated transport, dihydrodipicolinate synthase activity, snRNA_binding SNARE_interactions_in_vesicular_transport Lysine_biosynthesis protein binding, lyase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12352.7 | V-SNARE_C | 129 | 193 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| SNARE interactions in vesicular transport | golgi SNAP receptor complex member 1 | ko04130 | K08495 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000139 | Golgi membrane |
| GO:0005801 | cis-Golgi network |
| GO:0006888 | ER to Golgi vesicle-mediated transport |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.