Annotation of co-expression genes

PH01000252G0970's details annotation

1.Annotation

ICBR annotation: kinesin motor protein-related, putative, expressed

Blast result - : -
Blast annotation: -

2.Location

Scaffold: PH01000252
Strand: +

RegionStartEnd
gene724915728434
mRNA724915728434
exon724915725154
exon727118727272
exon727345727452
exon728067728304
exon728401728434
CDS725097725154
CDS727118727272
CDS727345727452
CDS728067728304
CDS728401728414

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000331
coexpression networkCFinderM000840vesicle docking involved in exocytosis,
RNA modification,
pseudouridine synthesis,
translational initiation,
RNA_transport
pseudouridine synthase activity,
translation initiation factor activity,
vesicle-mediated transport,
coexpression networkCFinderM000868proteasome_regulatory_particle
Peroxisome
Proteasome
Fatty_acid_metabolism
coexpression networkCFinderM000952glucose-1-phosphate adenylyltransferase activity,
vesicle docking involved in exocytosis,
glycogen biosynthetic process,
coexpression networkCFinderM001220vesicle docking involved in exocytosis,
Peroxisome
Fatty_acid_metabolism
coexpression networkCFinderM001224regulation of Rab GTPase activity,
microtubule-based movement,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00307.30CH43122

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.