PH01000303G0540's details annotation
1.Annotation
ICBR annotation: phosphopantothenate--cysteine ligase, putative, expressed
Blast result AT1G12350 : 1.60E-51
Blast annotation: 4-phospho-panto-thenoylcysteine synthetase
2.Location
Scaffold: PH01000303
Strand: +
| Region | Start | End |
| gene | 357697 | 362270 |
| mRNA | 357697 | 362270 |
| exon | 357697 | 358618 |
| exon | 359100 | 359147 |
| exon | 359640 | 359745 |
| exon | 359830 | 359889 |
| exon | 360306 | 360407 |
| exon | 361138 | 361257 |
| exon | 361426 | 361617 |
| exon | 361795 | 362270 |
| CDS | 358464 | 358618 |
| CDS | 359100 | 359147 |
| CDS | 359640 | 359745 |
| CDS | 359830 | 359889 |
| CDS | 360306 | 360407 |
| CDS | 361138 | 361257 |
| CDS | 361426 | 361617 |
| CDS | 361795 | 361815 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000347 | Pantothenate_and_CoA_biosynthesis Valine,_leucine_and_isoleucine_degradation CMGC_CDK-CRK7-CDK9 (from iTAK) pantothenate kinase activity, coenzyme A biosynthetic process, Propanoate_metabolism beta-Alanine_metabolism |
| coexpression network | CFinderM001086 | Pantothenate_and_CoA_biosynthesis tRNA processing, methyltransferase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04127.14 | DFP | 120 | 229 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Pantothenate and CoA biosynthesis | phosphopantothenate-cysteine ligase [EC:6.3.2.5] | ko00770 | K01922 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.