Annotation of co-expression genes

PH01000305G1060's details annotation

1.Annotation

ICBR annotation: lactate/malate dehydrogenase, putative, expressed

Blast result AT5G43330 : 9.00E-155
Blast annotation: Lactate/malate dehydrogenase family protein

2.Location

Scaffold: PH01000305
Strand: -

RegionStartEnd
gene749362753222
mRNA749362753222
exon749362749502
exon749736749847
exon749928750063
exon750145750422
exon750740750915
exon751014751135
exon751221751392
exon752957753222
CDS749408749502
CDS749736749847
CDS749928750063
CDS750145750422
CDS750740750915
CDS751014751135
CDS751221751392
CDS752957752999

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000496cullin-RING ubiquitin ligase complex,
ubiquitin protein ligase binding,
Pseudo ARR-B Transcription_Regulator(from iTAK)
ubiquitin-dependent protein catabolic process,
diphosphomevalonate decarboxylase activity,
L,L-diaminopimelate_aminotransferase_activity
Citrate_cycle_(TCA_cycle)
Pyruvate_metabolism
coexpression networkCFinderM001419nucleocytoplasmic transport,
GTP_catabolic_process
small GTPase mediated signal transduction,
protein transport,
signal transduction,
intracellular protein transport,
cellular carbohydrate metabolic process,
malate metabolic process,
GTPase activity,
GTP binding,
malate dehydrogenase activity,
L-malate dehydrogenase activity,
intracellular,
Pyruvate_metabolism
Carbon_fixation_in_photosynthetic_organisms
Glyoxylate_and_dicarboxylate_metabolism
Citrate_cycle_(TCA_cycle)
membrane,
coexpression networkCFinderM001834phosphopyruvate hydratase complex,
TAZ Transcription_Regulator(from iTAK)
L-malate dehydrogenase activity,
transcription cofactor activity,
malate dehydrogenase activity,
phosphopyruvate hydratase activity,
histone acetyltransferase activity,
malate metabolic process,
cellular carbohydrate metabolic process,
MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00056.22Ldh_1_N59198
PF02866.17Ldh_1_C202370

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Citrate cycle (TCA cycle)malate dehydrogenase [EC:1.1.1.37]ko00020K00025
Pyruvate metabolismmalate dehydrogenase [EC:1.1.1.37]ko00620K00025
Glyoxylate and dicarboxylate metabolismmalate dehydrogenase [EC:1.1.1.37]ko00630K00025
Carbon fixation in photosynthetic organismsmalate dehydrogenase [EC:1.1.1.37]ko00710K00025

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0005975carbohydrate metabolic process
GO:0006108malate metabolic process
GO:0016491oxidoreductase activity
GO:0016615malate dehydrogenase activity
GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0030060L-malate dehydrogenase activity
GO:0044262cellular carbohydrate metabolic process
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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