PH01000316G0160's details annotation
1.Annotation
ICBR annotation: Uncharacterized ACR, COG1565 containing protein, putative, expressed
Blast result AT1G04900 : 1.30E-70
Blast annotation: Protein of unknown function (DUF185)
2.Location
Scaffold: PH01000316
Strand: +
| Region | Start | End |
| gene | 61980 | 69183 |
| mRNA | 61980 | 69183 |
| exon | 61980 | 62096 |
| exon | 62185 | 62296 |
| exon | 62654 | 62736 |
| exon | 62829 | 62894 |
| exon | 64006 | 64106 |
| exon | 64335 | 64453 |
| exon | 64763 | 64807 |
| exon | 66694 | 66755 |
| exon | 67018 | 67062 |
| exon | 68211 | 68255 |
| exon | 68431 | 68562 |
| exon | 68684 | 69183 |
| CDS | 61980 | 62096 |
| CDS | 62185 | 62296 |
| CDS | 62654 | 62736 |
| CDS | 62829 | 62894 |
| CDS | 64006 | 64106 |
| CDS | 64335 | 64453 |
| CDS | 64763 | 64807 |
| CDS | 66694 | 66755 |
| CDS | 67018 | 67062 |
| CDS | 68211 | 68255 |
| CDS | 68431 | 68562 |
| CDS | 68684 | 68818 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000606 | histone_H2A_acetylation CTP biosynthetic process, histone_H4_acetylation protein neddylation, nucleoside_diphosphate_phosphorylation UTP biosynthetic process, GTP biosynthetic process, carbohydrate phosphorylation, chromatin remodeling, |
| coexpression network | CFinderM001197 | Ribosome translation, G2-like Transcription_Regulator(from PlantTFDB) GARP-G2-like Transcription_Regulator(from iTAK) L-ascorbic acid binding, structural constituent of ribosome, Arginine_and_proline_metabolism |
| coexpression network | CFinderM001471 | regulation of translational initiation, eukaryotic translation initiation factor 3 complex, WRKY Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001693 | translation, Ribosome structural constituent of ribosome, intracellular, |
| coexpression network | CFinderM001735 | TALE Transcription_Regulator(from PlantTFDB) HB-BELL Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001756 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis Lipoic_acid_metabolism HB-BELL Transcription_Regulator(from iTAK) TALE Transcription_Regulator(from PlantTFDB) aromatic amino acid family biosynthetic process, lipoate biosynthetic process, lipoate synthase activity, 3-dehydroquinate synthase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02636.16 | Methyltransf_28 | 124 | 201 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.