PH01000384G0460's details annotation
1.Annotation
ICBR annotation: T-complex protein 11, putative, expressed
Blast result AT1G22930 : 0.00E+00
Blast annotation: T-complex protein 11
2.Location
Scaffold: PH01000384
Strand: -
| Region | Start | End |
| gene | 325868 | 332062 |
| mRNA | 325868 | 332062 |
| exon | 325868 | 326571 |
| exon | 326667 | 326929 |
| exon | 327029 | 327262 |
| exon | 327355 | 328981 |
| exon | 329081 | 329632 |
| exon | 329721 | 329842 |
| exon | 330582 | 330677 |
| exon | 330983 | 332062 |
| CDS | 326094 | 326571 |
| CDS | 326667 | 326929 |
| CDS | 327029 | 327262 |
| CDS | 327355 | 328981 |
| CDS | 329081 | 329632 |
| CDS | 329721 | 329842 |
| CDS | 330582 | 330677 |
| CDS | 330983 | 331126 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000538 | GT61 GlycosylTransferases RLK-Pelle_PERK-1 (from iTAK) GT47 GlycosylTransferases Aminoacyl-tRNA_biosynthesis threonyl-tRNA aminoacylation, response to oxidative stress, histidine_catabolic_process_to_glutamate_and_formamide |
| coexpression network | CFinderM001044 | |
| coexpression network | CFinderM001118 | Aminoacyl-tRNA_biosynthesis threonyl-tRNA aminoacylation, HSF Transcription_Regulator(from PlantTFDB) threonine-tRNA ligase activity, tRNA aminoacylation, C2H2 Transcription_Regulator(from PlantTFDB) ligase activity, forming aminoacyl-tRNA and related compounds, tRNA aminoacylation for protein translation, cellular protein metabolic process, |
| coexpression network | CFinderM001464 | MYB-related Transcription_Regulator(from iTAK) MYB_related Transcription_Regulator(from PlantTFDB) RNA processing, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05794.12 | Tcp11 | 682 | 1168 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.