PH01000394G0380's details annotation
1.Annotation
ICBR annotation: immunoglobulin/major histocompatibility complex, putative, expressed
Blast result AT5G35430 : 6.00E-122
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein
2.Location
Scaffold: PH01000394
Strand: +
| Region | Start | End |
| gene | 295855 | 309081 |
| mRNA | 295855 | 309081 |
| exon | 295855 | 297153 |
| exon | 302443 | 302489 |
| exon | 302657 | 302740 |
| exon | 302954 | 303040 |
| exon | 305006 | 305221 |
| exon | 305467 | 305646 |
| exon | 305835 | 305921 |
| exon | 306003 | 306074 |
| exon | 306874 | 309081 |
| CDS | 297018 | 297153 |
| CDS | 302443 | 302489 |
| CDS | 302657 | 302740 |
| CDS | 302954 | 303040 |
| CDS | 305006 | 305221 |
| CDS | 305467 | 305646 |
| CDS | 305835 | 305921 |
| CDS | 306003 | 306074 |
| CDS | 306874 | 308751 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000219 | TKL-Pl-6 (from iTAK) potassium_ion_transmembrane_transport bZIP Transcription_Regulator(from PlantTFDB) GH36 Glycoside_Hydrolases potassium ion transmembrane transporter activity, |
| coexpression network | CFinderM000333 | protein arginylation, RNA_polymerase_complex arginyltransferase activity, transcription, DNA-dependent, DNA-directed RNA polymerase activity, |
| coexpression network | CFinderM000360 | protein arginylation, arginyltransferase activity, RNA_degradation MYB-related Transcription_Regulator(from iTAK) MYB_related Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM000520 | ER_membrane_protein_complex GT96 GlycosylTransferases TKL-Pl-4 (from iTAK) |
| coexpression network | CFinderM000802 | bZIP Transcription_Regulator(from PlantTFDB) CMGC_CDK-CDK8 (from iTAK) RNA_degradation Plant_hormone_signal_transduction regulation of transcription, DNA-dependent, sequence-specific DNA binding, |
| coexpression network | CFinderM000990 | MBF1 Transcription_Regulator(from iTAK) RNA_degradation |
| coexpression network | CFinderM001063 | CMGC_CDK-CDK8 (from iTAK) protein arginylation, arginyltransferase activity, RNA_degradation |
| coexpression network | CFinderM001235 | ubiquitin ligase complex, protein ubiquitination, binding, Ubiquitin_mediated_proteolysis RNA_degradation |
| coexpression network | CFinderM001644 | ER_membrane_protein_complex RNA_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| RNA degradation | CCR4-NOT transcription complex subunit 10 | ko03018 | K12607 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.