Annotation of co-expression genes

PH01000414G0910's details annotation

1.Annotation

ICBR annotation: expressed_protein

Blast result AT1G04210 : 8.20E-51
Blast annotation: Leucine-rich repeat protein kinase family protein

2.Location

Scaffold: PH01000414
Strand: -

RegionStartEnd
gene651795656814
mRNA651795656814
exon651795652140
exon652449652541
exon653150653573
exon653658656814
CDS652066652140
CDS652449652541
CDS653150653573
CDS653658653869

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000734WASH_complex
cytoskeleton,
phagocytosis,
malate metabolic process,
cellular carbohydrate metabolic process,
malate dehydrogenase activity,
L-malate dehydrogenase activity,
coexpression networkCFinderM000830cytoskeleton,
proton-transporting ATP synthase complex, catalytic core F(1),
phagocytosis,
branched chain family amino acid biosynthetic process,
signal peptide processing,
phosphoacetylglucosamine mutase activity,
Other_glycan_degradation
coexpression networkCFinderM001093Rcd1-like Transcription_Regulator(from iTAK)
phagocytosis,
cytoskeleton,
protein dephosphorylation,
protein serine/threonine phosphatase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF14381.5EDR118133

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
nullnull

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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