PH01000440G1020's details annotation
1.Annotation
ICBR annotation: GTP binding protein, putative, expressed
Blast result AT5G20300 : 4.00E-163
Blast annotation: Avirulence induced gene (AIG1) family protein
2.Location
Scaffold: PH01000440
Strand: -
| Region | Start | End |
| gene | 635431 | 641037 |
| mRNA | 635431 | 641037 |
| exon | 635431 | 637302 |
| exon | 637456 | 638387 |
| exon | 639098 | 641037 |
| CDS | 636166 | 637302 |
| CDS | 637456 | 638387 |
| CDS | 639098 | 639212 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000966 | TKL-Pl-1 (from iTAK) CMGC_CDK-CRK7-CDK9 (from iTAK) protein phosphorylation, chloride transport, CAMK_CAMKL-CHK1 (from iTAK) transferase activity, transferring phosphorus-containing groups, voltage-gated chloride channel activity, protein kinase activity, ion channel activity, ATP binding, |
| coexpression network | CFinderM000967 | TKL-Pl-1 (from iTAK) GH17 Glycoside_Hydrolases phosphate-containing compound metabolic process, phospholipid transport, magnesium ion binding, |
| coexpression network | CFinderM001179 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis aromatic amino acid family biosynthetic process, |
| coexpression network | CFinderM001280 | GH17 Glycoside_Hydrolases Arginine_and_proline_metabolism phospholipid transport, |
| coexpression network | CFinderM001756 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis Lipoic_acid_metabolism HB-BELL Transcription_Regulator(from iTAK) TALE Transcription_Regulator(from PlantTFDB) aromatic amino acid family biosynthetic process, lipoate biosynthetic process, lipoate synthase activity, 3-dehydroquinate synthase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04548.15 | AIG1 | 156 | 294 |
| PF11886.7 | TOC159_MAD | 446 | 709 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005525 | GTP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.