PH01000461G0530's details annotation
1.Annotation
ICBR annotation: zinc finger, C3HC4 type domain containing protein, expressed
Blast result AT2G20650 : 1.60E-96
Blast annotation: RING/U-box superfamily protein
2.Location
Scaffold: PH01000461
Strand: -
| Region | Start | End |
| gene | 359703 | 375162 |
| mRNA | 359703 | 375162 |
| exon | 359703 | 361639 |
| exon | 362553 | 362669 |
| exon | 362953 | 363281 |
| exon | 364152 | 364319 |
| exon | 365130 | 365223 |
| exon | 366230 | 366290 |
| exon | 367118 | 367233 |
| exon | 367572 | 367699 |
| exon | 368612 | 368681 |
| exon | 370022 | 370084 |
| exon | 370149 | 370275 |
| exon | 373916 | 373972 |
| exon | 374093 | 374179 |
| exon | 374276 | 374820 |
| exon | 375067 | 375162 |
| CDS | 361385 | 361639 |
| CDS | 362553 | 362669 |
| CDS | 362953 | 363281 |
| CDS | 364152 | 364319 |
| CDS | 365130 | 365223 |
| CDS | 366230 | 366290 |
| CDS | 367118 | 367233 |
| CDS | 367572 | 367699 |
| CDS | 368612 | 368681 |
| CDS | 370022 | 370084 |
| CDS | 370149 | 370275 |
| CDS | 373916 | 373972 |
| CDS | 374093 | 374179 |
| CDS | 374276 | 374820 |
| CDS | 375067 | 375108 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000474 | CAMK_CAMKL-CHK1 (from iTAK) eukaryotic translation initiation factor 3 complex, |
| coexpression network | CFinderM000790 | RLK-Pelle_LRR-VIII-1 (from iTAK) CMGC_CDK-CRK7-CDK9 (from iTAK) GARP-G2-like Transcription_Regulator(from iTAK) G2-like Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM000816 | CMGC_CDK-CRK7-CDK9 (from iTAK) |
| coexpression network | CFinderM001469 | FAR1 Transcription_Regulator(from PlantTFDB) CMGC_CDK-CRK7-CDK9 (from iTAK) RNA_degradation membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01554.17 | MatE | 15 | 127 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006855 | drug transmembrane transport |
| GO:0015238 | drug transmembrane transporter activity |
| GO:0015297 | antiporter activity |
| GO:0016020 | membrane |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.