Annotation of co-expression genes

PH01000466G0100's details annotation

1.Annotation

ICBR annotation: AAA-type ATPase family protein, putative, expressed

Blast result AT1G02890 : 0
Blast annotation: AAA-type ATPase family protein

2.Location

Scaffold: PH01000466
Strand: +

RegionStartEnd
gene5105868770
mRNA5105868770
exon5105853071
exon5316153275
exon5337953494
exon5500055116
exon5522455364
exon5551856209
exon5659656717
exon5686856959
exon5708257337
exon5742757478
exon6026760364
exon6050060570
exon6065260825
exon6258262872
exon6382163889
exon6404464148
exon6422664315
exon6474064815
exon6521665312
exon6539265461
exon6555765739
exon6642366545
exon6662566708
exon6680166985
exon6708167219
exon6730667365
exon6746867629
exon6771768770
CDS5298553071
CDS5316153275
CDS5337953494
CDS5500055116
CDS5522455364
CDS5551856209
CDS5659656717
CDS5686856959
CDS5708257337
CDS5742757478
CDS6026760364
CDS6050060570
CDS6065260825
CDS6258262872
CDS6382163889
CDS6404464148
CDS6422664315
CDS6474064815
CDS6521665312
CDS6539265461
CDS6555765739
CDS6642366545
CDS6662566708
CDS6680166985
CDS6708167219
CDS6730667365
CDS6746867629
CDS6771767830

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000352Ribosome
translation,
Ribosome
intracellular,
structural constituent of ribosome,
translational initiation,
transcription, DNA-dependent,
RNA_polymerase
coexpression networkCFinderM000623intracellular,
Ribosome
translation,
structural constituent of ribosome,
HB-other Transcription_Regulator(from PlantTFDB)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00498.25FHA118184
PF00004.28AAA10431172

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0005515protein binding
GO:0005524ATP binding
GO:0017111nucleoside-triphosphatase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.